; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001377 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001377
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription initiation factor TFIID subunit 10
Genome locationscaffold36:3655901..3658972
RNA-Seq ExpressionMS001377
SyntenyMS001377
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0016573 - histone acetylation (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:1990841 - promoter-specific chromatin binding (molecular function)
InterPro domainsIPR003923 - Transcription initiation factor TFIID, 23-30kDa subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598532.1 Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia]7.5e-6182.69Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

XP_008445293.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo]3.3e-6183.33Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

XP_022132183.1 transcription initiation factor TFIID subunit 10 [Momordica charantia]8.5e-6587.18Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVDPTSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

XP_022962589.1 transcription initiation factor TFIID subunit 10 [Cucurbita moschata]7.5e-6182.69Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

XP_038886703.1 transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida]3.3e-6183.33Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

TrEMBL top hitse value%identityAlignment
A0A0A0LPV6 Transcription initiation factor TFIID subunit 108.0e-6182.05Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNH+QQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

A0A1S3BD75 Transcription initiation factor TFIID subunit 101.6e-6183.33Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

A0A6J1BVJ5 Transcription initiation factor TFIID subunit 104.1e-6587.18Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVDPTSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

A0A6J1HHI7 Transcription initiation factor TFIID subunit 103.6e-6182.69Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

A0A6J1KB50 Transcription initiation factor TFIID subunit 103.6e-6182.69Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

SwissProt top hitse value%identityAlignment
O04173 Transcription initiation factor TFIID subunit 105.7e-5673.72Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNH QQ  E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A +VKDK  KQQKDKRL+LT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+DP +R+E
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

Q12962 Transcription initiation factor TFIID subunit 104.3e-1941.13Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRETLEDLVP
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  +    +   + KD++  LTMEDL+ AL E       
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRETLEDLVP

Query:  YPQLTVFLVLDEQYGVNVKHQEYF
                     YG+NVK   YF
Subjt:  YPQLTVFLVLDEQYGVNVKHQEYF

Q8K0H5 Transcription initiation factor TFIID subunit 104.3e-1941.13Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRETLEDLVP
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  +    +   + KD++  LTMEDL+ AL E       
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRETLEDLVP

Query:  YPQLTVFLVLDEQYGVNVKHQEYF
                     YG+NVK   YF
Subjt:  YPQLTVFLVLDEQYGVNVKHQEYF

Q9U5W9 Transcription initiation factor TFIID subunit 102.2e-1541.75Show/hide
Query:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASI------VKDKRDKQQKDKRLILTMEDLSKA
        +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DALQHCK R  +I         K  K  KD++  L MEDL  A
Subjt:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASI------VKDKRDKQQKDKRLILTMEDLSKA

Query:  LRE
        L +
Subjt:  LRE

Q9XZT7 Transcription initiation factor TFIID subunit 10b1.2e-1636.3Show/hide
Query:  GTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR-QASIVKDKRDKQQKDKRLILTMEDLS
        G   R    + LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQH KAR            + KD++  LTMEDL 
Subjt:  GTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR-QASIVKDKRDKQQKDKRLILTMEDLS

Query:  KALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEY
         AL +                    YG+NV+  +Y
Subjt:  KALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEY

Arabidopsis top hitse value%identityAlignment
AT4G31720.1 TBP-associated factor II 154.1e-5773.72Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNH QQ  E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A +VKDK  KQQKDKRL+LT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+DP +R+E
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE

AT4G31720.2 TBP-associated factor II 154.1e-5773.72Show/hide
Query:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT
        MNH QQ  E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A +VKDK  KQQKDKRL+LT
Subjt:  MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILT

Query:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+DP +R+E
Subjt:  MEDLSKALRETLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCATAGCCAGCAAGGGACAGAGGGCAGGCACGACGATGACGCAGCGCTTTCCGAGTTTCTAGCATCCCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGT
GGAGCATTACTTAGGGAAGAGTGGATTCCAGTGTCCCGACGTTCGATTGATCAGGCTTGTAGCTGTTGCCACACAGAAGTTCGTTGCAGATGTTGCAAGTGATGCGCTCC
AGCATTGTAAGGCAAGACAGGCATCAATAGTCAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAG
ACACTTGAGGATCTAGTTCCTTATCCACAACTAACTGTCTTTTTGGTACTTGATGAACAGTATGGCGTGAATGTCAAACATCAAGAATATTTTGCTGATAGCCCTTCGAC
TGGAGTGGATCCTACTTCCAGAGAGGAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCATAGCCAGCAAGGGACAGAGGGCAGGCACGACGATGACGCAGCGCTTTCCGAGTTTCTAGCATCCCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGT
GGAGCATTACTTAGGGAAGAGTGGATTCCAGTGTCCCGACGTTCGATTGATCAGGCTTGTAGCTGTTGCCACACAGAAGTTCGTTGCAGATGTTGCAAGTGATGCGCTCC
AGCATTGTAAGGCAAGACAGGCATCAATAGTCAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAG
ACACTTGAGGATCTAGTTCCTTATCCACAACTAACTGTCTTTTTGGTACTTGATGAACAGTATGGCGTGAATGTCAAACATCAAGAATATTTTGCTGATAGCCCTTCGAC
TGGAGTGGATCCTACTTCCAGAGAGGAG
Protein sequenceShow/hide protein sequence
MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRE
TLEDLVPYPQLTVFLVLDEQYGVNVKHQEYFADSPSTGVDPTSREE