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MS001401 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001401
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAnkyrin repeat-containing protein-like
Genome locationscaffold36:3917537..3918076
RNA-Seq ExpressionMS001401
SyntenyMS001401
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR026961 - PGG domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064715.1 ankyrin repeat-containing protein ITN1-like [Cucumis melo var. makuwa]1.0e-2142.08Show/hide
Query:  MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLC
        M+SR EE+    +AA N+            SS   W + + E LMV+ TF+   +FQAG NPPGGVWQD      EAGKSIMA+KN S ++ FIVG +  
Subjt:  MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLC

Query:  LAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        +  +  QL+ L+N+     +LS SR F+Y ++G  IT +  AYGSSV ALTP  ++ +V + L   L V  +V+ I  Y Q K
Subjt:  LAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

KAA0064719.1 ankyrin repeat-containing protein-like [Cucumis melo var. makuwa]2.1e-2750.36Show/hide
Query:  MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYG
        MV  TF+AA AFQAG NPPGGVWQDD  P YEAGKSIMA K+ SL+++F+ G T+C A +  Q ++LL   ++K+  S S+ F+YFTMG+ I+ I +AY 
Subjt:  MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYG

Query:  SSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        S+++ALTP   ++ V+ +L   L++S++VL IS Y + K
Subjt:  SSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

XP_016899921.1 PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo]1.5e-2843.96Show/hide
Query:  MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCL
        MS + E+E+V +    +T  + D  +      +  +G +R+ LMV  TF+AA AFQAG NPPGGVWQDD  P YEAGKSIMA K+ SL+++F+ G T+C 
Subjt:  MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCL

Query:  AAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        A +  Q ++LL   ++K+  S S+ F+YFTMG+ I+ I +AY S+++ALTP   ++ V+ +L   L++S++VL IS Y + K
Subjt:  AAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

XP_016900016.1 PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo]1.8e-2142.29Show/hide
Query:  EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQL
        EE  +AA N+            SS   W + + E LMV+ TF+   +FQAG NPPGGVWQD      EAGKSIMA+KN S ++ FIVG +  +  +  QL
Subjt:  EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQL

Query:  LMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        + L+N+     +LS SR F+Y ++G  IT +  AYGSSV ALTP  ++ +V + L   L V  +V+ I  Y Q K
Subjt:  LMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

XP_022132046.1 uncharacterized protein LOC111005012 [Momordica charantia]7.5e-5799.18Show/hide
Query:  MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA
        MSSRPEEEAVAAGNEIETGDDD NSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA
Subjt:  MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA

Query:  ALTQLLMLLNDFTKKAQLSASR
        ALTQLLMLLNDFTKKAQLSASR
Subjt:  ALTQLLMLLNDFTKKAQLSASR

TrEMBL top hitse value%identityAlignment
A0A1S4DVA8 uncharacterized protein LOC1079907057.2e-2943.96Show/hide
Query:  MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCL
        MS + E+E+V +    +T  + D  +      +  +G +R+ LMV  TF+AA AFQAG NPPGGVWQDD  P YEAGKSIMA K+ SL+++F+ G T+C 
Subjt:  MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCL

Query:  AAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        A +  Q ++LL   ++K+  S S+ F+YFTMG+ I+ I +AY S+++ALTP   ++ V+ +L   L++S++VL IS Y + K
Subjt:  AAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

A0A1S4DVK4 uncharacterized protein LOC1034885148.5e-2242.29Show/hide
Query:  EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQL
        EE  +AA N+            SS   W + + E LMV+ TF+   +FQAG NPPGGVWQD      EAGKSIMA+KN S ++ FIVG +  +  +  QL
Subjt:  EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQL

Query:  LMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        + L+N+     +LS SR F+Y ++G  IT +  AYGSSV ALTP  ++ +V + L   L V  +V+ I  Y Q K
Subjt:  LMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

A0A5A7VFP9 Ankyrin repeat-containing protein ITN1-like5.0e-2242.08Show/hide
Query:  MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLC
        M+SR EE+    +AA N+            SS   W + + E LMV+ TF+   +FQAG NPPGGVWQD      EAGKSIMA+KN S ++ FIVG +  
Subjt:  MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLC

Query:  LAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        +  +  QL+ L+N+     +LS SR F+Y ++G  IT +  AYGSSV ALTP  ++ +V + L   L V  +V+ I  Y Q K
Subjt:  LAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

A0A5D3BRK9 Ankyrin repeat-containing protein-like1.0e-2750.36Show/hide
Query:  MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYG
        MV  TF+AA AFQAG NPPGGVWQDD  P YEAGKSIMA K+ SL+++F+ G T+C A +  Q ++LL   ++K+  S S+ F+YFTMG+ I+ I +AY 
Subjt:  MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYG

Query:  SSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
        S+++ALTP   ++ V+ +L   L++S++VL IS Y + K
Subjt:  SSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK

A0A6J1BR52 uncharacterized protein LOC1110050123.6e-5799.18Show/hide
Query:  MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA
        MSSRPEEEAVAAGNEIETGDDD NSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA
Subjt:  MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAA

Query:  ALTQLLMLLNDFTKKAQLSASR
        ALTQLLMLLNDFTKKAQLSASR
Subjt:  ALTQLLMLLNDFTKKAQLSASR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G11000.1 Ankyrin repeat family protein4.9e-0640.32Show/hide
Query:  AQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRY--EAGKSIMAAKNESLYVTFIVG
        A   R +++VVA  +  A +QAG++PPGG WQD  D RY   AG+  M      +Y  F +G
Subjt:  AQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRY--EAGKSIMAAKNESLYVTFIVG

AT5G51160.1 Ankyrin repeat family protein1.4e-0829.93Show/hide
Query:  RESLMVVATFVAAAAFQAGINPPGGVWQDDGDP---------------RYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASR
        R +L+VVA+ VA A FQA + PPGG WQD   P                + AG+SIM   N   +  F+   T+  + +L+ L +L   F  + QL    
Subjt:  RESLMVVATFVAAAAFQAGINPPGGVWQDDGDP---------------RYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASR

Query:  YFLYFTMGTAITGIALAYG-------SSVRALTPPPLLTQVLSVLGV
          +YF+  T +  IA  +        +S+ A T P L+  + + +G+
Subjt:  YFLYFTMGTAITGIALAYG-------SSVRALTPPPLLTQVLSVLGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGTAGGCCGGAGGAAGAAGCAGTAGCAGCAGGCAACGAAATTGAAACTGGAGACGATGATCTGAACTCTGCGGCGTCATCAGGGAACCGCTGGGCTCAGGGCGA
ACGAGAGTCGCTAATGGTAGTCGCAACGTTCGTGGCGGCGGCCGCTTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTCTGGCAAGACGACGGCGACCCCAGATACGAGG
CCGGCAAGTCCATCATGGCCGCCAAAAACGAATCTCTGTACGTCACTTTCATCGTCGGCGCAACGCTGTGCCTGGCGGCTGCGCTGACGCAACTTCTGATGTTGCTCAAC
GATTTCACGAAAAAGGCCCAACTCTCGGCTTCCAGGTACTTTCTCTACTTCACCATGGGCACCGCAATCACCGGCATCGCTTTGGCTTATGGGTCGTCGGTTAGAGCTTT
GACGCCGCCGCCGCTCTTGACGCAGGTCCTCTCTGTCCTCGGGGTTAATCTTCTTGTCAGTCTTCTCGTACTCTTAATTTCATTCTACTTTCAGACGAAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGTAGGCCGGAGGAAGAAGCAGTAGCAGCAGGCAACGAAATTGAAACTGGAGACGATGATCTGAACTCTGCGGCGTCATCAGGGAACCGCTGGGCTCAGGGCGA
ACGAGAGTCGCTAATGGTAGTCGCAACGTTCGTGGCGGCGGCCGCTTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTCTGGCAAGACGACGGCGACCCCAGATACGAGG
CCGGCAAGTCCATCATGGCCGCCAAAAACGAATCTCTGTACGTCACTTTCATCGTCGGCGCAACGCTGTGCCTGGCGGCTGCGCTGACGCAACTTCTGATGTTGCTCAAC
GATTTCACGAAAAAGGCCCAACTCTCGGCTTCCAGGTACTTTCTCTACTTCACCATGGGCACCGCAATCACCGGCATCGCTTTGGCTTATGGGTCGTCGGTTAGAGCTTT
GACGCCGCCGCCGCTCTTGACGCAGGTCCTCTCTGTCCTCGGGGTTAATCTTCTTGTCAGTCTTCTCGTACTCTTAATTTCATTCTACTTTCAGACGAAG
Protein sequenceShow/hide protein sequence
MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLN
DFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK