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MS001407 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001407
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description17.9 kDa class II heat shock protein-like
Genome locationscaffold36:3956728..3956961
RNA-Seq ExpressionMS001407
SyntenyMS001407
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACN31251.1 unknown [Zea mays]2.3e-1061.04Show/hide
Query:  SIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        S+V GF GSGGGSF TVTV TPS HTA T   SA SG+ N  MN PI RS+ +Y A S  SS   SP+I ST SSST
Subjt:  SIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

BAS70761.1 Os01g0184050, partial [Oryza sativa Japonica Group]2.7e-1160.98Show/hide
Query:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFAD-SFSSS---LFLSPVIRSTFSSST
        TS+V GF GSGGGSF TVTV TPSWHTA     SA SG+ N  MN PI RSI +Y  D SFSSS      SP+I S+ SSST
Subjt:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFAD-SFSSS---LFLSPVIRSTFSSST

KAB8080257.1 hypothetical protein EE612_000677, partial [Oryza sativa]4.6e-1159.26Show/hide
Query:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSS---LFLSPVIRSTFSSST
        TS+V GF GSGGGSF TVTV TPSWHTA     SA SG+ N  MN PI RSI +Y  DS  SS      SP+I S+ SSST
Subjt:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSS---LFLSPVIRSTFSSST

RWR80560.1 hypothetical protein CKAN_00920600 [Cinnamomum micranthum f. kanehirae]5.5e-0473.33Show/hide
Query:  AFSGNINFLMNFPILRSILKYFADSFSS-SLFLSPVIRSTFSSST
        AFSG+ NFLMN P L SIL Y A SFSS SLFLSP+I ST SSST
Subjt:  AFSGNINFLMNFPILRSILKYFADSFSS-SLFLSPVIRSTFSSST

THU59578.1 hypothetical protein C4D60_Mb07t03570 [Musa balbisiana]2.8e-0855.26Show/hide
Query:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        +VF FFGSGGG+F TV V TPS + A+T    A SG+ N  MN PI RSIL+YF  S SS    SP+   T SSST
Subjt:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

TrEMBL top hitse value%identityAlignment
A0A0N7KCG6 Os01g0184050 protein (Fragment)1.3e-1160.98Show/hide
Query:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFAD-SFSSS---LFLSPVIRSTFSSST
        TS+V GF GSGGGSF TVTV TPSWHTA     SA SG+ N  MN PI RSI +Y  D SFSSS      SP+I S+ SSST
Subjt:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFAD-SFSSS---LFLSPVIRSTFSSST

A0A2P2JEH2 17.9 kDa class II heat shock protein-like1.3e-1466.67Show/hide
Query:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        TSIV GF GSGGGSF TVTVRTPS  TA    + AFSG+ NFLMN P LRS L     SFSSS FLSP++ ST SSST
Subjt:  TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

A0A453E7M3 SHSP domain-containing protein1.2e-0957.89Show/hide
Query:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        +V GF GSGGGSF TVTV TPS H A    +SAFSG+ N  ++ P+ RSI +Y A SF SSL  SP++ ST SSST
Subjt:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

A0A4S8JCQ5 Uncharacterized protein1.4e-0855.26Show/hide
Query:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        +VF FFGSGGG+F TV V TPS + A+T    A SG+ N  MN PI RSIL+YF  S SS    SP+   T SSST
Subjt:  IVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

C0PAQ6 Uncharacterized protein1.1e-1061.04Show/hide
Query:  SIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST
        S+V GF GSGGGSF TVTV TPS HTA T   SA SG+ N  MN PI RS+ +Y A S  SS   SP+I ST SSST
Subjt:  SIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCTCAATCGTCTTCGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTGCACAGTCACCGTGAGAACGCCGTCGTGGCACACCGCCGTCACGGCGTTCGTATCCGCATTCTC
CGGCAACATAAATTTCCTCATGAATTTTCCGATCCTCCGCTCCATTCTCAAATACTTCGCCGATTCTTTCTCCTCCTCTCTCTTCCTCTCGCCGGTGATCAGAAGTACGT
TCTCGTCCTCCACC
mRNA sequenceShow/hide mRNA sequence
ACCTCAATCGTCTTCGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTGCACAGTCACCGTGAGAACGCCGTCGTGGCACACCGCCGTCACGGCGTTCGTATCCGCATTCTC
CGGCAACATAAATTTCCTCATGAATTTTCCGATCCTCCGCTCCATTCTCAAATACTTCGCCGATTCTTTCTCCTCCTCTCTCTTCCTCTCGCCGGTGATCAGAAGTACGT
TCTCGTCCTCCACC
Protein sequenceShow/hide protein sequence
TSIVFGFFGSGGGSFCTVTVRTPSWHTAVTAFVSAFSGNINFLMNFPILRSILKYFADSFSSSLFLSPVIRSTFSSST