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MS001413 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001413
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationscaffold36:3987171..3987725
RNA-Seq ExpressionMS001413
SyntenyMS001413
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064726.1 classical arabinogalactan protein 9-like [Cucumis melo var. makuwa]1.7e-4867.37Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP
        MEHF +  HFS + ILLI+ LAG  AA ED R+V+VVPPVSLLCISECSTCP IC+PPPPP   LKSPP  PH PPLAY PLN+PP P P    P PSP 
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP

Query:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW
        PPPPP+   A  SH PPPPAF YYFNLPPPPPVLIPVPVPP  TAAP GNTNSNAYNYYFYA  SSS   SLP  +   LF+F  +   W
Subjt:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW

KAG6585753.1 hypothetical protein SDJN03_18486, partial [Cucurbita argyrosperma subsp. sororia]5.0e-4873.37Show/hide
Query:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH
        ILLI+ LAGAA  S++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN  P PSPPRPTPS     PPPP  P+AA SH
Subjt:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH

Query:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM
         PPPPAF YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ PA +L ALF+F  +
Subjt:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM

KAG7020664.1 hypothetical protein SDJN02_17350, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4772.78Show/hide
Query:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH
        ILLI+ LAGAA  S++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN  P PSPPRPTPS     PPPP  P+AA SH
Subjt:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH

Query:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM
         PPPPA+ YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ PA +L ALF+F  +
Subjt:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM

XP_022132157.1 leucine-rich repeat extensin-like protein 3 [Momordica charantia]3.3e-92100Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP
        MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP

Query:  PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW
        PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW
Subjt:  PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW

XP_022951103.1 extensin-3-like [Cucurbita moschata]1.1e-4773.37Show/hide
Query:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH
        ILLI+ LAGAA AS++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN PPSP    P PSPSPPPPP    P+AA SH
Subjt:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH

Query:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM
         PPPPAF YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ P  +L ALF+F  +
Subjt:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM

TrEMBL top hitse value%identityAlignment
A0A0A0KD44 Uncharacterized protein2.7e-4766.67Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICS--PPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPS
        MEHF +  HFS + ILLI+ L  A A  ED R+VEVVPPVSLLCISECSTCP IC+  PPPPP   LKSPP  PH PPLAY PLN+P    PPRPT SP 
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICS--PPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPS

Query:  PP---PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW
        PP   PPPPP+   A  SH PPPPAF YYFNLPPPPPVLIPVPVPP  TA PHGNTNSNAYNYYFYA  SSS   SLP      LF+F  M   W
Subjt:  PP---PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW

A0A1S3BCX5 classical arabinogalactan protein 9-like1.3e-4669.06Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP
        MEHF +  HFS + ILLI+ LAG  AA ED R+V+VVPPVSLLCISECSTCP IC+PPPPP   LKSPP  PH PPLAY PLN+PP P P    P PSP 
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP

Query:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALF
        PPPPP+   A  SH PPPPAF YYFNLPPPPPVLIPVPVPP  TAAP GNTNSNAYNYYFYA  SSS   SLP  +    F
Subjt:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALF

A0A5A7VEH7 Classical arabinogalactan protein 9-like8.4e-4967.37Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP
        MEHF +  HFS + ILLI+ LAG  AA ED R+V+VVPPVSLLCISECSTCP IC+PPPPP   LKSPP  PH PPLAY PLN+PP P P    P PSP 
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPP

Query:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW
        PPPPP+   A  SH PPPPAF YYFNLPPPPPVLIPVPVPP  TAAP GNTNSNAYNYYFYA  SSS   SLP  +   LF+F  +   W
Subjt:  PPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSL--SLPATWLCALFVFQFMFSCW

A0A6J1BT26 leucine-rich repeat extensin-like protein 31.6e-92100Show/hide
Query:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP
        MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP
Subjt:  MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPP

Query:  PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW
        PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW
Subjt:  PPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW

A0A6J1GGS2 extensin-3-like5.4e-4873.37Show/hide
Query:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH
        ILLI+ LAGAA AS++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN PPSP    P PSPSPPPPP    P+AA SH
Subjt:  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSH

Query:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM
         PPPPAF YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ P  +L ALF+F  +
Subjt:  PPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein2.8e-0441.8Show/hide
Query:  PPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTP---SPSPPPPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPV-------PPKTAAPHG
        PPPPP      PPP  PP    P+ +PP PSPP P P   SP PPPPPPP PP+ +   PPPPP     ++ PPPPP   P PV       PP  + P  
Subjt:  PPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTP---SPSPPPPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVLIPVPV-------PPKTAAPHG

Query:  NTNSNAYNYYFYASKSSSLSLP
          +      Y+Y+S     S P
Subjt:  NTNSNAYNYYFYASKSSSLSLP

AT5G11990.1 proline-rich family protein4.6e-0737.99Show/hide
Query:  LSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPS---PPLAA
        L +++I  +     AS       V+ P   LCISECSTCP ICSPPP   +   SPPP SP L       P S SPP P P    PPP   S   PPL  
Subjt:  LSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPS---PPLAA

Query:  LSHPPPPPAFNYYFNLPPPPPVL-----IPVPVPPKTAAPHGNTNSNAY------NYYFYASKSSSLSLPATWLCALFV
        + H PPPP F Y+ + PPPPP+       P  VP    +P G +            +YFY + +++L   +++L AL V
Subjt:  LSHPPPPPAFNYYFNLPPPPPVL-----IPVPVPPKTAAPHGNTNSNAY------NYYFYASKSSSLSLPATWLCALFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATTTCAGAAGAATTTTCCATTTCTCTTGCCTCTCGATTCTTCTGATCATTGACCTCGCCGGAGCTGCGGCGGCGTCTGAAGACCACCGTCTGGTCGAGGTGGT
CCCTCCGGTCAGTCTACTCTGTATCAGCGAGTGTTCAACTTGCCCTGTCATATGCTCGCCGCCGCCGCCGCCCACGGCGGCTCTCAAGTCACCTCCGCCCCACTCGCCGC
CGCTGGCCTACGTCCCTCTCAACGCACCCCCATCCCCGTCCCCACCTCGGCCAACCCCGTCACCGTCTCCGCCGCCGCCGCCGCCGCCGTCGCCACCGCTGGCGGCTTTA
TCTCATCCTCCACCGCCTCCTGCTTTCAATTACTACTTTAACTTGCCTCCACCGCCGCCGGTGCTGATTCCGGTACCTGTGCCGCCGAAGACGGCGGCGCCTCATGGAAA
TACGAATTCCAATGCTTATAATTACTACTTCTACGCCTCGAAATCGTCTTCTCTGTCTCTTCCGGCGACGTGGCTTTGTGCTCTGTTTGTCTTCCAATTCATGTTTTCTT
GCTGG
mRNA sequenceShow/hide mRNA sequence
ATGGAACATTTCAGAAGAATTTTCCATTTCTCTTGCCTCTCGATTCTTCTGATCATTGACCTCGCCGGAGCTGCGGCGGCGTCTGAAGACCACCGTCTGGTCGAGGTGGT
CCCTCCGGTCAGTCTACTCTGTATCAGCGAGTGTTCAACTTGCCCTGTCATATGCTCGCCGCCGCCGCCGCCCACGGCGGCTCTCAAGTCACCTCCGCCCCACTCGCCGC
CGCTGGCCTACGTCCCTCTCAACGCACCCCCATCCCCGTCCCCACCTCGGCCAACCCCGTCACCGTCTCCGCCGCCGCCGCCGCCGCCGTCGCCACCGCTGGCGGCTTTA
TCTCATCCTCCACCGCCTCCTGCTTTCAATTACTACTTTAACTTGCCTCCACCGCCGCCGGTGCTGATTCCGGTACCTGTGCCGCCGAAGACGGCGGCGCCTCATGGAAA
TACGAATTCCAATGCTTATAATTACTACTTCTACGCCTCGAAATCGTCTTCTCTGTCTCTTCCGGCGACGTGGCTTTGTGCTCTGTTTGTCTTCCAATTCATGTTTTCTT
GCTGG
Protein sequenceShow/hide protein sequence
MEHFRRIFHFSCLSILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPPPHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAAL
SHPPPPPAFNYYFNLPPPPPVLIPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFMFSCW