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MS001416 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001416
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein, putative
Genome locationscaffold36:3999759..4000406
RNA-Seq ExpressionMS001416
SyntenyMS001416
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064730.1 putative transmembrane protein [Cucumis melo var. makuwa]9.6e-7573.76Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTD----PTADGENDGD-QNEQLNKDLPLPPKM
        MVRSFPTD+NPLIHPAIS  LLAAGMAAAIAMITTLCGVRSRRRS   + S+  A   NKA+EN SP T      TA   +D + +NE   K+LPLPPKM
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTD----PTADGENDGD-QNEQLNKDLPLPPKM

Query:  QAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMS
        Q   +SSPP+QI KSASERK+++MRSMSIKVPRSLSVVRNHLDEGRQRRKE+IKGEDSIWTKTIILGEKCKV DEEDG+IYEGKGKKI+AYHPRA SSMS
Subjt:  QAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMS

Query:  ITISRQGSAIDPETLPNPEPK
        I++SRQ SA + E LPN E K
Subjt:  ITISRQGSAIDPETLPNPEPK

KAG6585751.1 hypothetical protein SDJN03_18484, partial [Cucurbita argyrosperma subsp. sororia]7.4e-5160.8Show/hide
Query:  LAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGE--------NDGDQNEQLNKDLPLPPKMQAAANSSPPSQIAKSASE
        +AAGM AAIAMIT LCGVRSR R  S     S    + K D NGS  T  +  G         NDG + E+L K+LPLPPKMQ  A+ SPPS+IAKSASE
Subjt:  LAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGE--------NDGDQNEQLNKDLPLPPKMQAAANSSPPSQIAKSASE

Query:  RKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISRQGSAIDPETLPN
        R++ +M S+++KVPRS SV R  L+EG  RRKE++  E+ IW KTIILGEKC+V DEEDGVIYEGKGK+ISAYHPR+ SSMSI+ISRQ SAID E LP+
Subjt:  RKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISRQGSAIDPETLPN

KAG6598610.1 hypothetical protein SDJN03_08388, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7370.37Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGDQNEQLNKDLPLPPKMQAAAN
        MVRSFPTDENPLIHPAIS SLLAAGMAAAIAMITTLCG RS R++ +  +++SP A +NK DEN SP  +P+  GE   D +EQ  K+LPLPPKMQ   +
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGDQNEQLNKDLPLPPKMQAAAN

Query:  SSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISR
        +SPP+QI+KSASERK+++M+SM++ VPRSLSV R++LD+GR ++K++IKGEDSIWTKTIILGEKCKV DEEDG+IYEGKGKKISAYHPRA SSMS ++SR
Subjt:  SSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISR

Query:  QGSAIDPETLPNPEPK
        QGSAID E LP+PE K
Subjt:  QGSAIDPETLPNPEPK

KGN47811.2 hypothetical protein Csa_018925 [Cucumis sativus]2.8e-7473.06Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGD---QNEQLNKDLPLPPKMQA
        MVRSFPTD+NPLIHPAI   LLAAGMAAAI+MITTLCGVRSRRRS +  + +S AA +NK DEN SP T       N      +NE   K+LPLPPKMQ 
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGD---QNEQLNKDLPLPPKMQA

Query:  AANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSIT
         A++SPPSQI+KSASERK+++MRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKV DEEDG+IYEGKGKKI+AYHPRA SSMSI+
Subjt:  AANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSIT

Query:  ISRQGSAIDPETLPNPEPK
        +SRQ SA++ E L + E K
Subjt:  ISRQGSAIDPETLPNPEPK

XP_023002698.1 uncharacterized protein LOC111496482 [Cucurbita maxima]8.7e-6061.82Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT--------ADGENDGDQNEQLNKDLPLP
        MV SFPTDEN LIHPAIS +L+AAGM  AIAMIT LCGVRSRR     + S+  A  + K D NGS  T  +         D  +DG + E+  K+LPLP
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT--------ADGENDGDQNEQLNKDLPLP

Query:  PKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQS
        PKMQ  A+ SPPSQIAKSASER++ +M  M+++VPRS SV R  L+EG +RRKE++K E+ IW KTIILGEKC+V DEEDGVIYEGKGK+ISAYHPR+ S
Subjt:  PKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQS

Query:  SMSITISRQGSAIDPETLPN
        SMSI+ISRQ SAID E LP+
Subjt:  SMSITISRQGSAIDPETLPN

TrEMBL top hitse value%identityAlignment
A0A0A0KD46 Uncharacterized protein7.2e-6071.28Show/hide
Query:  MITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGD---QNEQLNKDLPLPPKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPR
        MITTLCGVRSRRRS +  + +S AA +NK DEN SP T       N      +NE   K+LPLPPKMQ  A++SPPSQI+KSASERK+++MRSMSIKVPR
Subjt:  MITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGD---QNEQLNKDLPLPPKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPR

Query:  SLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISRQGSAIDPETLPNPEPK
        SLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKV DEEDG+IYEGKGKKI+AYHPRA SSMSI++SRQ SA++ E L + E K
Subjt:  SLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISRQGSAIDPETLPNPEPK

A0A498HTS8 Uncharacterized protein1.5e-3344.78Show/hide
Query:  MVRSFPTDE-NPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGE------------NDGDQNEQLNK
        M R+ PTDE N LIHP +S S  AA MAA IA+IT+LC   S RR  S   S SPA+ E +  + G   T   A GE            N G+ + +++K
Subjt:  MVRSFPTDE-NPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGE------------NDGDQNEQLNK

Query:  DLPLPPKMQ-----AAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNH--LDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKG
        +LPLPP+M+      + N     Q+ KSASER++  + ++S+K+PRSLS+ R     +E  +R+  ++K EDS+W KTIILGEKCKVPDE++ VIY+ KG
Subjt:  DLPLPPKMQ-----AAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNH--LDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKG

Query:  KKISAYHPRAQSSMSITISRQGSAIDPETL
        ++I AYHPR         SRQ S IDP  L
Subjt:  KKISAYHPRAQSSMSITISRQGSAIDPETL

A0A5A7VC31 Putative transmembrane protein4.7e-7573.76Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTD----PTADGENDGD-QNEQLNKDLPLPPKM
        MVRSFPTD+NPLIHPAIS  LLAAGMAAAIAMITTLCGVRSRRRS   + S+  A   NKA+EN SP T      TA   +D + +NE   K+LPLPPKM
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTD----PTADGENDGD-QNEQLNKDLPLPPKM

Query:  QAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMS
        Q   +SSPP+QI KSASERK+++MRSMSIKVPRSLSVVRNHLDEGRQRRKE+IKGEDSIWTKTIILGEKCKV DEEDG+IYEGKGKKI+AYHPRA SSMS
Subjt:  QAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMS

Query:  ITISRQGSAIDPETLPNPEPK
        I++SRQ SA + E LPN E K
Subjt:  ITISRQGSAIDPETLPNPEPK

A0A6A1WQ24 Uncharacterized protein2.1e-3544.1Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT---------------ADGENDGDQNEQL
        MVR  PT+E PL HP +SFSLLA G+AAAIA IT LCG R  +R      S+       K D +    T  T                + E      E  
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT---------------ADGENDGDQNEQL

Query:  NKDLPLPPKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISA
         ++LPLPP M     S    +I KS+S+R ++  +++++K+PRSLS+ R    E   +RK+ +  EDSIW KTIILGEKCKVPDE+D VIY+GKGK+IS 
Subjt:  NKDLPLPPKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISA

Query:  YHPRAQSSMSITISRQGSAIDPETLPNPE
        YHP+  S   I++SR+GS  +PE  P PE
Subjt:  YHPRAQSSMSITISRQGSAIDPETLPNPE

A0A6J1KUB9 uncharacterized protein LOC1114964824.2e-6061.82Show/hide
Query:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT--------ADGENDGDQNEQLNKDLPLP
        MV SFPTDEN LIHPAIS +L+AAGM  AIAMIT LCGVRSRR     + S+  A  + K D NGS  T  +         D  +DG + E+  K+LPLP
Subjt:  MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPT--------ADGENDGDQNEQLNKDLPLP

Query:  PKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQS
        PKMQ  A+ SPPSQIAKSASER++ +M  M+++VPRS SV R  L+EG +RRKE++K E+ IW KTIILGEKC+V DEEDGVIYEGKGK+ISAYHPR+ S
Subjt:  PKMQAAANSSPPSQIAKSASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQS

Query:  SMSITISRQGSAIDPETLPN
        SMSI+ISRQ SAID E LP+
Subjt:  SMSITISRQGSAIDPETLPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26114.1 unknown protein1.7e-0536.14Show/hide
Query:  VVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKIS---AYHPRAQSSMSITISRQGSAIDPETLP
        V++   +E +  RK+++  ++SI    IILGE+C+V D E+G   E + ++++    Y PR+ S  SI+ISR  S ID   +P
Subjt:  VVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKIS---AYHPRAQSSMSITISRQGSAIDPETLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGAAGTTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCCTTCTCCCTTCTGGCTGCCGGAATGGCGGCGGCCATCGCCATGATCACCACACTCTG
CGGCGTCCGGTCCAGGAGAAGATCGGGGTCGGACGACCAATCCACATCTCCGGCCGCCGGCGAAAACAAAGCAGACGAGAACGGTTCCCCCTTGACAGACCCAACGGCGG
ACGGCGAAAACGACGGCGACCAAAACGAACAGCTGAACAAAGATCTTCCCCTGCCGCCGAAGATGCAGGCGGCGGCGAATTCGAGCCCGCCGAGCCAGATCGCGAAATCG
GCGTCGGAGAGAAAAATCAGCAACATGAGAAGCATGAGCATCAAAGTTCCGAGAAGTTTATCGGTGGTGAGGAACCATCTGGACGAAGGGCGGCAGCGGCGGAAAGAGAG
GATCAAAGGGGAGGATTCGATTTGGACGAAGACAATAATTTTGGGGGAAAAATGCAAAGTTCCAGATGAAGAAGATGGTGTCATTTACGAAGGAAAAGGGAAGAAAATTT
CAGCTTATCATCCGCGAGCTCAAAGTTCAATGTCGATTACCATTTCTAGGCAAGGTTCCGCCATTGATCCTGAAACTCTGCCCAACCCAGAACCAAAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGAAGTTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCCTTCTCCCTTCTGGCTGCCGGAATGGCGGCGGCCATCGCCATGATCACCACACTCTG
CGGCGTCCGGTCCAGGAGAAGATCGGGGTCGGACGACCAATCCACATCTCCGGCCGCCGGCGAAAACAAAGCAGACGAGAACGGTTCCCCCTTGACAGACCCAACGGCGG
ACGGCGAAAACGACGGCGACCAAAACGAACAGCTGAACAAAGATCTTCCCCTGCCGCCGAAGATGCAGGCGGCGGCGAATTCGAGCCCGCCGAGCCAGATCGCGAAATCG
GCGTCGGAGAGAAAAATCAGCAACATGAGAAGCATGAGCATCAAAGTTCCGAGAAGTTTATCGGTGGTGAGGAACCATCTGGACGAAGGGCGGCAGCGGCGGAAAGAGAG
GATCAAAGGGGAGGATTCGATTTGGACGAAGACAATAATTTTGGGGGAAAAATGCAAAGTTCCAGATGAAGAAGATGGTGTCATTTACGAAGGAAAAGGGAAGAAAATTT
CAGCTTATCATCCGCGAGCTCAAAGTTCAATGTCGATTACCATTTCTAGGCAAGGTTCCGCCATTGATCCTGAAACTCTGCCCAACCCAGAACCAAAA
Protein sequenceShow/hide protein sequence
MVRSFPTDENPLIHPAISFSLLAAGMAAAIAMITTLCGVRSRRRSGSDDQSTSPAAGENKADENGSPLTDPTADGENDGDQNEQLNKDLPLPPKMQAAANSSPPSQIAKS
ASERKISNMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSIWTKTIILGEKCKVPDEEDGVIYEGKGKKISAYHPRAQSSMSITISRQGSAIDPETLPNPEPK