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MS001417 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001417
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationscaffold36:4000630..4000821
RNA-Seq ExpressionMS001417
SyntenyMS001417
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034357 - photosynthetic membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR001280 - Photosystem I PsaA/PsaB
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAF64868.1 photosystem I P700 chlorophyll a apoprotein A1 [Gnetum parvifolium]2.0e-1260.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
KJB83201.1 hypothetical protein B456_013G235100, partial [Gossypium raimondii]2.0e-1260.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG VDFLVHHI+ FTIHVTVLILLKGVLF+R   F+   +N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
QWY87857.1 photosystem I P700 apoprotein A1 [Entandrophragma utile]2.0e-1260.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
YP_002519792.1 photosystem I P700 apoprotein A1 [Gnetum parvifolium]2.0e-1260.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
YP_009757150.1 photosystem I P700 apoprotein A1 [Elatostema dissectum]2.0e-1260.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
TrEMBL top hitse value%identityAlignment
A0A1B2IKQ6 Photosystem I P700 chlorophyll a apoprotein A19.7e-1360.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
A0A1B2ILM5 Photosystem I P700 chlorophyll a apoprotein A19.7e-1360.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
B7ZIC3 Photosystem I P700 chlorophyll a apoprotein A19.7e-1360.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
N0DPK4 Photosystem I P700 chlorophyll a apoprotein A19.7e-1360.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
R4L5L3 Photosystem I P700 chlorophyll a apoprotein A19.7e-1360.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
SwissProt top hitse value%identityAlignment
Q2QD89 Photosystem I P700 chlorophyll a apoprotein A15.9e-1560.81Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG  DFLVHHIH FTIHVTVLILLKGVLFSR    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
Q4G3F6 Photosystem I P700 chlorophyll a apoprotein A17.7e-1558.11Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        +IA++PIQLG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD +F
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
Q85B27 Photosystem I P700 chlorophyll a apoprotein A11.0e-1459.46Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
Q9MUJ0 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)7.7e-1559.46Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG  DFLVHHIH FTIHVTVLILLKGVLF+R    +   +N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
Q9MUK3 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)7.7e-1559.46Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG  DFLVHHIH FTIHVTVLILLKGVLF+R    +   +N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
Arabidopsis top hitse value%identityAlignment
ATCG00350.1 Photosystem I, PsaA/PsaB protein9.3e-1659.46Show/hide
Query:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF
        ++ALLPI LG  DFLVHHIH FTIHVTVLILLKGVLF+R    +    N           + GTCQVSAWD VF
Subjt:  QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMN----------SKRGTCQVSAWDPVF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAATTGCTTTGCTACCTATTCAATTAGGAATTGTAGATTTTTTAGTACATCATATTCATACATTTACGATTCATGTGACGGTATTGATACTTCTAAAGGGTGTTCTATT
TTCTCGTAGACTGCATTTCGTTTCCCTTGTGATGAACTCGAAGAGGGGTACATGTCAAGTATCTGCTTGGGATCCTGTCTTC
mRNA sequenceShow/hide mRNA sequence
CAAATTGCTTTGCTACCTATTCAATTAGGAATTGTAGATTTTTTAGTACATCATATTCATACATTTACGATTCATGTGACGGTATTGATACTTCTAAAGGGTGTTCTATT
TTCTCGTAGACTGCATTTCGTTTCCCTTGTGATGAACTCGAAGAGGGGTACATGTCAAGTATCTGCTTGGGATCCTGTCTTC
Protein sequenceShow/hide protein sequence
QIALLPIQLGIVDFLVHHIHTFTIHVTVLILLKGVLFSRRLHFVSLVMNSKRGTCQVSAWDPVF