; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001448 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001448
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger CCCH domain-containing protein 23
Genome locationscaffold36:4206605..4207498
RNA-Seq ExpressionMS001448
SyntenyMS001448
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060981.1 zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa]1.3e-10165.06Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPTA I  WDSL+DP+A  +S  Y S    AGH    DSP     +F+S  + D D P  V D FSCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   + A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGES  RL ALM +L++D+LK +P  +    P +     +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RPLISA S
Subjt:  VEQFRPLISAAS

KAG7029281.1 Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-10165.36Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE
        MI ESM LNPT  I  WDSL+DPAA   S   A N +      +     +   + D+D P A+ DAF+CDHFRM++FKVR CARGRSHDWTKCPYAH GE
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE

Query:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL
        KARRRDPRKF+YSG ECPDLR G C KGD CE+AHGVFE WLHPDRYRTQ CRDG  CRRRVCFFAHSSEQLRIP KQSIRSP  R    +A+SSPTSIL
Subjt:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL

Query:  I-SPTESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP
        I S ++SPPMSP    TTGGES  RL ALM NL  D+LK +P  +G G P       +   W+R  EEEPAMERVESGRNLR  MYAKLMRENSVE+ RP
Subjt:  I-SPTESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP

Query:  LISAAS
        LI A S
Subjt:  LISAAS

NP_001295793.1 zinc finger CCCH domain-containing protein 20 [Cucumis sativus]1.1e-10063.46Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPT+ I  WDSL+DP      +P  S+  +  H    DSP     +F+S  + D D P  V DA+SCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   I A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGESL RL ALM +L++D+LK +P  +            +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RP+ISA S
Subjt:  VEQFRPLISAAS

XP_008444505.1 PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [Cucumis melo]8.3e-10164.74Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPTA I  WDSL+DP+A  +S  Y S    AGH    DSP     +F+S  + D D P  V D FSCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   + A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGES  RL ALM +L++D+ K +P  +    P +     +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RPLISA S
Subjt:  VEQFRPLISAAS

XP_022131988.1 zinc finger CCCH domain-containing protein 23 [Momordica charantia]4.9e-17099.33Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE
        MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFE FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE

Query:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL
        KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL
Subjt:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL

Query:  ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRPLISAASWS
        ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQ RPLISAASWS
Subjt:  ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRPLISAASWS

TrEMBL top hitse value%identityAlignment
A0A0A0LNN8 Uncharacterized protein1.5e-10063.14Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPT+ I  WDSL+DP      +P  S+  +  H    DSP     +F+S  + D D P  V DA+SCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   I A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGES  RL ALM +L++D+LK +P  +            +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RP+ISA S
Subjt:  VEQFRPLISAAS

A0A1S3BBA7 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 204.0e-10164.74Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPTA I  WDSL+DP+A  +S  Y S    AGH    DSP     +F+S  + D D P  V D FSCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   + A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGES  RL ALM +L++D+ K +P  +    P +     +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RPLISA S
Subjt:  VEQFRPLISAAS

A0A5A7V5C0 Zinc finger CCCH domain-containing protein 206.2e-10265.06Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPTA I  WDSL+DP+A  +S  Y S    AGH    DSP     +F+S  + D D P  V D FSCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   + A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGES  RL ALM +L++D+LK +P  +    P +     +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRV-----SCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RPLISA S
Subjt:  VEQFRPLISAAS

A0A6J1BV05 zinc finger CCCH domain-containing protein 232.4e-17099.33Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE
        MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFE FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGE

Query:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL
        KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL
Subjt:  KARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSIL

Query:  ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRPLISAASWS
        ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQ RPLISAASWS
Subjt:  ISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRPLISAASWS

Q5NDD3 Putative CCCH-type zinc finger protein CsSEF15.2e-10163.46Show/hide
Query:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP
        MIAESMLLNPT+ I  WDSL+DP      +P  S+  +  H    DSP     +F+S  + D D P  V DA+SCD FRM++FKVR+CARGRSHDWTKCP
Subjt:  MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPA----EFES--FSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCP

Query:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS
        YAH GEKARRRDPRKF YSGAECPDLR G CKKGD CE+AHG FE WLHPDRYRTQ CRDG  CRRRVCFFAH+SEQLRIP KQS+RSP AR   I A+S
Subjt:  YAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAIS

Query:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS
        SPTSIL+SP ++SPP+SP     +GGESL RL ALM +L++D+LK +P  +            +   W+R  EEEPAMERVESGRNLR  MYAKLMRENS
Subjt:  SPTSILISP-TESPPMSP----TTGGESLRRLAALMQNLQVDDLKLSPPAAGLG-----CPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENS

Query:  VEQFRPLISAAS
        V++ RP+ISA S
Subjt:  VEQFRPLISAAS

SwissProt top hitse value%identityAlignment
O82199 Zinc finger CCCH domain-containing protein 201.8e-6644.35Show/hide
Query:  MIAESML-LNPTAQILPWDSLEDPAAYFASNPYASNSNAA--------------GHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARG
        MI ES    NPT  I PW   ED      S+ Y S    +               + P PDS  +    S  DSP+   DA++CDHFRM++FKVR CARG
Subjt:  MIAESML-LNPTAQILPWDSLEDPAAYFASNPYASNSNAA--------------GHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARG

Query:  RSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS------
        RSHDWT+CPYAHPGEKARRRDPRKF YSG  CP+ R+G CK+GD CEF+HGVFE WLHP RYRTQ C+DG  CRRRVCFFAHS +Q+R+   QS      
Subjt:  RSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS------

Query:  --IRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGES----LRR---------LAALMQNLQVDDLKLSPPA----------AGLGCPRVSCLR---
          + SP  R +      SP+S       SPP+SP    +S    L R         + A ++NLQ++ +K S  +          +G G PR S L    
Subjt:  --IRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGES----LRR---------LAALMQNLQVDDLKLSPPA----------AGLGCPRVSCLR---

Query:  ---------------WERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP
                       WE   EEEPAMERVESGR LR  ++ KL +EN + +  P
Subjt:  ---------------WERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP

O82307 Zinc finger CCCH domain-containing protein 231.3e-6949.04Show/hide
Query:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD
        +PT  I  WD + DP A  +S   + N N+     H+PSP  DS A                 S  DE SP  + D+FS D FR+++FK+R CARGRSHD
Subjt:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD

Query:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG
        WT+CP+AHPGEKARRRDPRKF YSG  CP+ R+G C++GD+CEF+HGVFE WLHP RYRTQ C+DG +CRRR+CFFAH++EQLR+    S+   L    G
Subjt:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG

Query:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL
        +A  +SPTSIL+S     P+ESPP+SP+TG      L A M+ +Q++       SP  + +  P  S LR      W R      EE PAME VESG+ L
Subjt:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL

Query:  RTLMYAKLMRENSV
        R  MYA+L RENS+
Subjt:  RTLMYAKLMRENSV

Q6L4N4 Zinc finger CCCH domain-containing protein 354.5e-5741.95Show/hide
Query:  PYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVA---DAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKK
        PY        + PS ++ A      DE+   AVA   DA++CD FRM++FKVR CARGRSHDWT+CP+AHPGEKARRRDPR++ YSG  CPD R+G CK+
Subjt:  PYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVA---DAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKK

Query:  GDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRI--PSKQ---------------SIRSPLARG----------------KGIAAIS
        GD CEFAHGVFE WLHP RYRTQ C+DG ACRRRVCFFAH+ +QLR+  PS+Q               +  SPLA                  K I + S
Subjt:  GDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRI--PSKQ---------------SIRSPLARG----------------KGIAAIS

Query:  SPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPR--VSCLRWERS--------------------------------
        SPTS L+S     P+ESPP+SP   G +LRR A       V+D+ +S     LG PR   SC  +  +                                
Subjt:  SPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPR--VSCLRWERS--------------------------------

Query:  ------------------YEEEPAMERVESGRNLRTLMYAKLMRENSV
                           EEE  MERVESGR LR  ++ +L +E +V
Subjt:  ------------------YEEEPAMERVESGRNLRTLMYAKLMRENSV

Q9FU27 Zinc finger CCCH domain-containing protein 21.1e-5547.58Show/hide
Query:  HAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFES
        + P+ D     +   +  +  A  DA++CD FRM++FKVR CARGRSHDWT+CP+AHPGEKARRRDPRK+ YSG  CPD R+G CK+GD CE+AHGVFE 
Subjt:  HAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFES

Query:  WLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRI-PSKQS-----IRSPLARGKGIAAI---------------SSPTSILIS-----PTESPPMSPTTG
        WLHP RYRTQ C+DG ACRRRVCFFAH+ +QLR+ P++QS       SPLA     + +               SSPTS L+S     P+ESPP+SP  G
Subjt:  WLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRI-PSKQS-----IRSPLARGKGIAAI---------------SSPTSILIS-----PTESPPMSPTTG

Query:  GESLRR------------LAALMQNLQVDDLKLSPPAAGLGCPRVSCL
          ++RR            + A  + L+++ +K S P+ G   P  S +
Subjt:  GESLRR------------LAALMQNLQVDDLKLSPPAAGLGCPRVSCL

Q9M0G2 Zinc finger CCCH domain-containing protein 496.9e-6645.13Show/hide
Query:  MIAESMLLNPTAQILPWDSLED--PAAYFA---SNPYASNSNAAGHAPS--PDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKC
        MI E+    PT +I PW  LE+   + +F+   ++P  S   A        P +  + ES+ D   P +  DA+SCDHFRM+DFKVR CARGRSHDWT+C
Subjt:  MIAESMLLNPTAQILPWDSLED--PAAYFA---SNPYASNSNAAGHAPS--PDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKC

Query:  PYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS--------IRSPLA
        PYAHPGEKARRRDPRK+ YSG  CPD R+G CKKGD+CEFAHGVFE WLHP RYRTQ C+DG  C R++CFFAHS +QLR    +S        + SP+ 
Subjt:  PYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS--------IRSPLA

Query:  RGKGIAAISSPTSILISPTESPPMSPTTGGE---------------SLRRLAALMQNLQVDDLKLSP---PAAGLGCPRVSCLR----------------
        R +      SP S       SPPMSP    E               S+  +    +NLQ + +K  P   P  G G PR S L                 
Subjt:  RGKGIAAISSPTSILISPTESPPMSPTTGGE---------------SLRRLAALMQNLQVDDLKLSP---PAAGLGCPRVSCLR----------------

Query:  --WERSYEEEPAMER-VESGRNLRTLMYAKLMRENSVEQ
          WE   EEEP MER VESGR LR  M  KL +EN +++
Subjt:  --WERSYEEEPAMER-VESGRNLRTLMYAKLMRENSVEQ

Arabidopsis top hitse value%identityAlignment
AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein8.3e-5154.1Show/hide
Query:  SDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQ-GFCKKGDTCEFAHGVFESWLHPDRYRTQACR
        SD D P      ++ DHFRMF+FK+R C R RSHDWT CP+AHPGEKARRRDPR+F+YSG  CP+ R+ G C +GD CEFAHGVFE WLHP RYRT+AC+
Subjt:  SDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQ-GFCKKGDTCEFAHGVFESWLHPDRYRTQACR

Query:  DGMACRRRVCFFAHSSEQLRIPSKQSI----RSPLARGKGIAAI---SSPTSILI--------SPTESPPMSPTTGGESLRRL
        DG  C+R+VCFFAHS  QLR+   +++     SP    K    +   SSPTS L+        SP+ SPPMSP     +  RL
Subjt:  DGMACRRRVCFFAHSSEQLRIPSKQSI----RSPLARGKGIAAI---SSPTSILI--------SPTESPPMSPTTGGESLRRL

AT2G19810.1 CCCH-type zinc finger family protein1.3e-6744.35Show/hide
Query:  MIAESML-LNPTAQILPWDSLEDPAAYFASNPYASNSNAA--------------GHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARG
        MI ES    NPT  I PW   ED      S+ Y S    +               + P PDS  +    S  DSP+   DA++CDHFRM++FKVR CARG
Subjt:  MIAESML-LNPTAQILPWDSLEDPAAYFASNPYASNSNAA--------------GHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARG

Query:  RSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS------
        RSHDWT+CPYAHPGEKARRRDPRKF YSG  CP+ R+G CK+GD CEF+HGVFE WLHP RYRTQ C+DG  CRRRVCFFAHS +Q+R+   QS      
Subjt:  RSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS------

Query:  --IRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGES----LRR---------LAALMQNLQVDDLKLSPPA----------AGLGCPRVSCLR---
          + SP  R +      SP+S       SPP+SP    +S    L R         + A ++NLQ++ +K S  +          +G G PR S L    
Subjt:  --IRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGES----LRR---------LAALMQNLQVDDLKLSPPA----------AGLGCPRVSCLR---

Query:  ---------------WERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP
                       WE   EEEPAMERVESGR LR  ++ KL +EN + +  P
Subjt:  ---------------WERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRP

AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein9.5e-7149.04Show/hide
Query:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD
        +PT  I  WD + DP A  +S   + N N+     H+PSP  DS A                 S  DE SP  + D+FS D FR+++FK+R CARGRSHD
Subjt:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD

Query:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG
        WT+CP+AHPGEKARRRDPRKF YSG  CP+ R+G C++GD+CEF+HGVFE WLHP RYRTQ C+DG +CRRR+CFFAH++EQLR+    S+   L    G
Subjt:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG

Query:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL
        +A  +SPTSIL+S     P+ESPP+SP+TG      L A M+ +Q++       SP  + +  P  S LR      W R      EE PAME VESG+ L
Subjt:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL

Query:  RTLMYAKLMRENSV
        R  MYA+L RENS+
Subjt:  RTLMYAKLMRENSV

AT2G25900.2 Zinc finger C-x8-C-x5-C-x3-H type family protein9.5e-7149.04Show/hide
Query:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD
        +PT  I  WD + DP A  +S   + N N+     H+PSP  DS A                 S  DE SP  + D+FS D FR+++FK+R CARGRSHD
Subjt:  NPTAQILPWDSLEDPAAYFASNPYASNSNAAG---HAPSP--DSPAEF--------------ESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHD

Query:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG
        WT+CP+AHPGEKARRRDPRKF YSG  CP+ R+G C++GD+CEF+HGVFE WLHP RYRTQ C+DG +CRRR+CFFAH++EQLR+    S+   L    G
Subjt:  WTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKG

Query:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL
        +A  +SPTSIL+S     P+ESPP+SP+TG      L A M+ +Q++       SP  + +  P  S LR      W R      EE PAME VESG+ L
Subjt:  IAAISSPTSILIS-----PTESPPMSPTTGGESLRRLAALMQNLQVDD---LKLSPPAAGLGCPRVSCLR------WER----SYEEEPAMERVESGRNL

Query:  RTLMYAKLMRENSV
        R  MYA+L RENS+
Subjt:  RTLMYAKLMRENSV

AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.9e-6745.13Show/hide
Query:  MIAESMLLNPTAQILPWDSLED--PAAYFA---SNPYASNSNAAGHAPS--PDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKC
        MI E+    PT +I PW  LE+   + +F+   ++P  S   A        P +  + ES+ D   P +  DA+SCDHFRM+DFKVR CARGRSHDWT+C
Subjt:  MIAESMLLNPTAQILPWDSLED--PAAYFA---SNPYASNSNAAGHAPS--PDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKC

Query:  PYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS--------IRSPLA
        PYAHPGEKARRRDPRK+ YSG  CPD R+G CKKGD+CEFAHGVFE WLHP RYRTQ C+DG  C R++CFFAHS +QLR    +S        + SP+ 
Subjt:  PYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQS--------IRSPLA

Query:  RGKGIAAISSPTSILISPTESPPMSPTTGGE---------------SLRRLAALMQNLQVDDLKLSP---PAAGLGCPRVSCLR----------------
        R +      SP S       SPPMSP    E               S+  +    +NLQ + +K  P   P  G G PR S L                 
Subjt:  RGKGIAAISSPTSILISPTESPPMSPTTGGE---------------SLRRLAALMQNLQVDDLKLSP---PAAGLGCPRVSCLR----------------

Query:  --WERSYEEEPAMER-VESGRNLRTLMYAKLMRENSVEQ
          WE   EEEP MER VESGR LR  M  KL +EN +++
Subjt:  --WERSYEEEPAMER-VESGRNLRTLMYAKLMRENSVEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGCCGAATCAATGCTTCTCAATCCCACGGCCCAGATTCTCCCCTGGGACTCCCTTGAAGATCCCGCCGCCTATTTCGCCAGCAATCCCTACGCCTCCAACTCCAA
TGCCGCCGGCCACGCCCCGTCTCCCGACTCGCCGGCGGAGTTCGAGTCCTTTTCCGACGAAGATTCGCCGGTGGCGGTGGCGGACGCGTTCTCGTGTGACCATTTTCGGA
TGTTCGACTTCAAAGTCCGCACGTGCGCGCGTGGGAGGTCGCACGATTGGACCAAATGTCCGTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGAGATCCGAGGAAGTTC
CGCTACTCCGGCGCCGAGTGCCCGGACTTACGGCAGGGGTTCTGCAAAAAGGGGGACACGTGCGAGTTCGCCCACGGCGTGTTCGAGAGTTGGCTCCACCCGGACCGGTA
CCGGACTCAGGCGTGCCGCGACGGCATGGCCTGCCGCCGGCGCGTCTGCTTCTTCGCCCACTCGTCGGAGCAACTCCGCATTCCGTCGAAACAGAGCATCCGCTCTCCTC
TGGCCAGGGGAAAGGGAATCGCCGCTATATCATCGCCGACTTCCATCCTGATTTCACCGACGGAGTCGCCGCCAATGTCTCCGACGACCGGCGGCGAGTCGTTGAGGAGA
TTAGCGGCACTGATGCAGAATCTCCAGGTGGACGATCTGAAATTGAGTCCTCCGGCGGCGGGCTTGGGTTGTCCCCGGGTTTCATGTCTCCGATGGGAGAGAAGTTACGA
GGAAGAGCCGGCAATGGAGAGAGTGGAATCAGGGAGAAATCTGCGAACCCTAATGTACGCAAAATTGATGAGAGAAAATTCGGTGGAGCAATTCCGGCCGCTCATATCAG
CCGCGTCTTGGAGC
mRNA sequenceShow/hide mRNA sequence
ATGATCGCCGAATCAATGCTTCTCAATCCCACGGCCCAGATTCTCCCCTGGGACTCCCTTGAAGATCCCGCCGCCTATTTCGCCAGCAATCCCTACGCCTCCAACTCCAA
TGCCGCCGGCCACGCCCCGTCTCCCGACTCGCCGGCGGAGTTCGAGTCCTTTTCCGACGAAGATTCGCCGGTGGCGGTGGCGGACGCGTTCTCGTGTGACCATTTTCGGA
TGTTCGACTTCAAAGTCCGCACGTGCGCGCGTGGGAGGTCGCACGATTGGACCAAATGTCCGTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGAGATCCGAGGAAGTTC
CGCTACTCCGGCGCCGAGTGCCCGGACTTACGGCAGGGGTTCTGCAAAAAGGGGGACACGTGCGAGTTCGCCCACGGCGTGTTCGAGAGTTGGCTCCACCCGGACCGGTA
CCGGACTCAGGCGTGCCGCGACGGCATGGCCTGCCGCCGGCGCGTCTGCTTCTTCGCCCACTCGTCGGAGCAACTCCGCATTCCGTCGAAACAGAGCATCCGCTCTCCTC
TGGCCAGGGGAAAGGGAATCGCCGCTATATCATCGCCGACTTCCATCCTGATTTCACCGACGGAGTCGCCGCCAATGTCTCCGACGACCGGCGGCGAGTCGTTGAGGAGA
TTAGCGGCACTGATGCAGAATCTCCAGGTGGACGATCTGAAATTGAGTCCTCCGGCGGCGGGCTTGGGTTGTCCCCGGGTTTCATGTCTCCGATGGGAGAGAAGTTACGA
GGAAGAGCCGGCAATGGAGAGAGTGGAATCAGGGAGAAATCTGCGAACCCTAATGTACGCAAAATTGATGAGAGAAAATTCGGTGGAGCAATTCCGGCCGCTCATATCAG
CCGCGTCTTGGAGC
Protein sequenceShow/hide protein sequence
MIAESMLLNPTAQILPWDSLEDPAAYFASNPYASNSNAAGHAPSPDSPAEFESFSDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKF
RYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGESLRR
LAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVEQFRPLISAASWS