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MS001475 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001475
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SOB FIVE-LIKE 6-like
Genome locationscaffold36:4480193..4480546
RNA-Seq ExpressionMS001475
SyntenyMS001475
Gene Ontology termsGO:0009691 - cytokinin biosynthetic process (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
InterPro domainsIPR044670 - SOB-five-Like (SOFL) family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132075.1 uncharacterized protein LOC111005036 isoform X1 [Momordica charantia]1.6e-5593.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

XP_022132076.1 uncharacterized protein LOC111005036 isoform X2 [Momordica charantia]1.6e-5593.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

XP_022132077.1 uncharacterized protein LOC111005036 isoform X3 [Momordica charantia]1.6e-5593.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

XP_038886133.1 uncharacterized protein LOC120076391 isoform X1 [Benincasa hispida]2.1e-3165.38Show/hide
Query:  MSNFSGTHC-NSGCDSGWTVYFQDSNER---FRPSVADYSGG---EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAA-KTKRRDEIG
        MSNFSG+HC NSGC+SGWT+YF++S E    FR S  DY GG   EEEGDLSM+SDASSGP NG+      +EE+N+QPV RRNGGKSAA K+KR++E+G
Subjt:  MSNFSGTHC-NSGCDSGWTVYFQDSNER---FRPSVADYSGG---EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAA-KTKRRDEIG

Query:  RRNQHSSLDDTATSPVFALSKV----PYFN
        RRNQHS LDDTA+SPVF LS V    PY N
Subjt:  RRNQHSSLDDTATSPVFALSKV----PYFN

XP_038886134.1 uncharacterized protein LOC120076391 isoform X2 [Benincasa hispida]2.1e-3165.38Show/hide
Query:  MSNFSGTHC-NSGCDSGWTVYFQDSNER---FRPSVADYSGG---EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAA-KTKRRDEIG
        MSNFSG+HC NSGC+SGWT+YF++S E    FR S  DY GG   EEEGDLSM+SDASSGP NG+      +EE+N+QPV RRNGGKSAA K+KR++E+G
Subjt:  MSNFSGTHC-NSGCDSGWTVYFQDSNER---FRPSVADYSGG---EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAA-KTKRRDEIG

Query:  RRNQHSSLDDTATSPVFALSKV----PYFN
        RRNQHS LDDTA+SPVF LS V    PY N
Subjt:  RRNQHSSLDDTATSPVFALSKV----PYFN

TrEMBL top hitse value%identityAlignment
A0A0A0LR31 Uncharacterized protein4.0e-2859.23Show/hide
Query:  MSNFSGTHC-NSGCDSGWTVYFQDS---NERFRPSVADYSGG----EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIG
        MSNF+G+HC NSGC+SGWT+YF++S    ERFR S  DY GG    EEE DLSM+SDASSGPRNG+      +EE N Q V R  G   A K+KR++E+G
Subjt:  MSNFSGTHC-NSGCDSGWTVYFQDS---NERFRPSVADYSGG----EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIG

Query:  RRNQHSSLDDTATSPVFALSKV----PYFN
         RNQHS LDDTA+SPVF LSK+    PY N
Subjt:  RRNQHSSLDDTATSPVFALSKV----PYFN

A0A6J1BR82 uncharacterized protein LOC111005036 isoform X27.7e-5693.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

A0A6J1BRF5 uncharacterized protein LOC111005036 isoform X17.7e-5693.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

A0A6J1BSU7 uncharacterized protein LOC111005036 isoform X37.7e-5693.39Show/hide
Query:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
        MSNFSGTHCNSGCDSGWTVYFQDS+ERFRPSVADY GGEEEGDLSMVSDASSGPRNGFGDGPVGFEE NFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL
Subjt:  MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSL

Query:  DDTATSPVFALSK---VPYFN
        DDTATSPVFALSK    PY N
Subjt:  DDTATSPVFALSK---VPYFN

A0A6J1K5J3 uncharacterized protein LOC1114924831.3e-2657.46Show/hide
Query:  MSNFSGTHC-NSGCDSGWTVYFQDSNE---RFRPSVADYSG-------GEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGK-SAAKTKRR
        MS+FSG+HC N+ C+SGWT+Y ++S E   RFRPS  DY G        EEEGDLSM+SDASSGPR+       G+ E+N Q V RRNGGK +AAK+KR+
Subjt:  MSNFSGTHC-NSGCDSGWTVYFQDSNE---RFRPSVADYSG-------GEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGK-SAAKTKRR

Query:  DEIGRRNQHSSLDDTATSPVFALSKV----PYFN
        +++GRRN+HS LDDTA+SPVF LSK     PY N
Subjt:  DEIGRRNQHSSLDDTATSPVFALSKV----PYFN

SwissProt top hitse value%identityAlignment
Q8L9K4 Protein SOB FIVE-LIKE 52.2e-0737.19Show/hide
Query:  NSGCDSGWTVYFQDSNERFRPSVADYSGG---------------------EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRR
        +SGC+SGWT+Y   S     PS    S G                     EEE DLSM+SDASSGPRN         EED+ + +      K   + K+R
Subjt:  NSGCDSGWTVYFQDSNERFRPSVADYSGG---------------------EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRR

Query:  DEIGRRNQHSSLDDTATSPVF
         +  + N  S LDDTA+SP+F
Subjt:  DEIGRRNQHSSLDDTATSPVF

Arabidopsis top hitse value%identityAlignment
AT4G33800.1 unknown protein1.6e-0837.19Show/hide
Query:  NSGCDSGWTVYFQDSNERFRPSVADYSGG---------------------EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRR
        +SGC+SGWT+Y   S     PS    S G                     EEE DLSM+SDASSGPRN         EED+ + +      K   + K+R
Subjt:  NSGCDSGWTVYFQDSNERFRPSVADYSGG---------------------EEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRR

Query:  DEIGRRNQHSSLDDTATSPVF
         +  + N  S LDDTA+SP+F
Subjt:  DEIGRRNQHSSLDDTATSPVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAATTTTTCGGGCACGCATTGTAATAGCGGCTGCGACTCGGGCTGGACGGTGTATTTCCAGGATTCCAATGAGAGATTCCGGCCGAGTGTGGCGGATTACAGCGG
AGGGGAGGAGGAGGGCGACTTGTCGATGGTTTCCGACGCCTCGTCCGGGCCGCGGAATGGGTTCGGAGACGGACCAGTGGGGTTCGAGGAGGATAATTTCCAGCCCGTGC
CACGCCGGAACGGCGGCAAATCGGCGGCCAAGACTAAGAGAAGAGACGAAATTGGCCGCCGGAACCAACATTCTTCCCTTGACGACACTGCTACTTCCCCTGTTTTTGCC
CTTTCCAAGGTCCCTTATTTTAAT
mRNA sequenceShow/hide mRNA sequence
ATGAGTAATTTTTCGGGCACGCATTGTAATAGCGGCTGCGACTCGGGCTGGACGGTGTATTTCCAGGATTCCAATGAGAGATTCCGGCCGAGTGTGGCGGATTACAGCGG
AGGGGAGGAGGAGGGCGACTTGTCGATGGTTTCCGACGCCTCGTCCGGGCCGCGGAATGGGTTCGGAGACGGACCAGTGGGGTTCGAGGAGGATAATTTCCAGCCCGTGC
CACGCCGGAACGGCGGCAAATCGGCGGCCAAGACTAAGAGAAGAGACGAAATTGGCCGCCGGAACCAACATTCTTCCCTTGACGACACTGCTACTTCCCCTGTTTTTGCC
CTTTCCAAGGTCCCTTATTTTAAT
Protein sequenceShow/hide protein sequence
MSNFSGTHCNSGCDSGWTVYFQDSNERFRPSVADYSGGEEEGDLSMVSDASSGPRNGFGDGPVGFEEDNFQPVPRRNGGKSAAKTKRRDEIGRRNQHSSLDDTATSPVFA
LSKVPYFN