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MS001548 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001548
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold119:131444..131764
RNA-Seq ExpressionMS001548
SyntenyMS001548
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4401531.1 hypothetical protein G4B88_001725 [Cannabis sativa]4.5e-1741.51Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        VS LI   G+W+  L+  +F   D  LILS+PI+ Y   D W+WHF   GHY+ KS Y L I  +    S+S+      W S WA+K+P KI  F WK  
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPT
        H+ +P+
Subjt:  HDHIPT

TXG52844.1 hypothetical protein EZV62_022013 [Acer yangbiense]4.5e-1744.12Show/hide
Query:  INSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKASHDHI
        + ++G W+A LV  I  +ED DL+LS+P SS    D   WH+ + G Y  KS Y + +  +  A S+SS   G+DW  IW LK+P KIKIF+W+A H  +
Subjt:  INSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKASHDHI

Query:  PT
        PT
Subjt:  PT

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]4.5e-1771.43Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKS
        V+ LIN  G+WD +L+S IFCEED+DLILS+P+S YN  DSWIWHFDKRGHYN KS
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-3559.81Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        V+S I + G WD   +S+ FC ED+DLILS+PISSYN+ DSW+WH+DKRG+Y+ +S YKLY+H KC+A S S+++RG  W SIW L VP KIKIF+W+++
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPTA
        H+HIPTA
Subjt:  HDHIPTA

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]4.5e-1741.51Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        VS LI   G+W+  L+  +F   D  LILS+PI+ Y   D W+WHF   GHY+ KS Y L I  +    S+S+      W S WA+K+P KI  F WK  
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPT
        H+ +P+
Subjt:  HDHIPT

TrEMBL top hitse value%identityAlignment
A0A5C7H789 zf-RVT domain-containing protein2.2e-1744.12Show/hide
Query:  INSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKASHDHI
        + ++G W+A LV  I  +ED DL+LS+P SS    D   WH+ + G Y  KS Y + +  +  A S+SS   G+DW  IW LK+P KIKIF+W+A H  +
Subjt:  INSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKASHDHI

Query:  PT
        PT
Subjt:  PT

A0A6J1BRN0 uncharacterized protein LOC1110047872.2e-1771.43Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKS
        V+ LIN  G+WD +L+S IFCEED+DLILS+P+S YN  DSWIWHFDKRGHYN KS
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKS

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-3559.81Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        V+S I + G WD   +S+ FC ED+DLILS+PISSYN+ DSW+WH+DKRG+Y+ +S YKLY+H KC+A S S+++RG  W SIW L VP KIKIF+W+++
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPTA
        H+HIPTA
Subjt:  HDHIPTA

A0A7J6HV29 zf-RVT domain-containing protein2.2e-1741.51Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        VS LI   G+W+  L+  +F   D  LILS+PI+ Y   D W+WHF   GHY+ KS Y L I  +    S+S+      W S WA+K+P KI  F WK  
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPT
        H+ +P+
Subjt:  HDHIPT

A0A7J6I395 zf-RVT domain-containing protein2.2e-1741.51Show/hide
Query:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS
        VS LI   G+W+  L+  +F   D  LILS+PI+ Y   D W+WHF   GHY+ KS Y L I  +    S+S+      W S WA+K+P KI  F WK  
Subjt:  VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKAS

Query:  HDHIPT
        H+ +P+
Subjt:  HDHIPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTCTAGCCTCATCAATTCACAAGGAGAATGGGACGCTTACCTTGTCTCTAACATTTTCTGTGAGGAAGACAAAGATCTTATTCTATCTTTGCCCATTAGTTCTTACAA
CATTACTGATTCCTGGATTTGGCACTTTGACAAGAGAGGACATTATAATGCTAAAAGTCGTTATAAACTCTATATTCATCAGAAGTGCAGTGCTCTTTCTACCAGTTCTA
GTTTTAGGGGCTATGATTGGAAGTCTATCTGGGCTTTAAAGGTTCCACCAAAAATTAAAATTTTTCTATGGAAGGCAAGCCATGATCATATTCCAACTGCT
mRNA sequenceShow/hide mRNA sequence
GTGTCTAGCCTCATCAATTCACAAGGAGAATGGGACGCTTACCTTGTCTCTAACATTTTCTGTGAGGAAGACAAAGATCTTATTCTATCTTTGCCCATTAGTTCTTACAA
CATTACTGATTCCTGGATTTGGCACTTTGACAAGAGAGGACATTATAATGCTAAAAGTCGTTATAAACTCTATATTCATCAGAAGTGCAGTGCTCTTTCTACCAGTTCTA
GTTTTAGGGGCTATGATTGGAAGTCTATCTGGGCTTTAAAGGTTCCACCAAAAATTAAAATTTTTCTATGGAAGGCAAGCCATGATCATATTCCAACTGCT
Protein sequenceShow/hide protein sequence
VSSLINSQGEWDAYLVSNIFCEEDKDLILSLPISSYNITDSWIWHFDKRGHYNAKSRYKLYIHQKCSALSTSSSFRGYDWKSIWALKVPPKIKIFLWKASHDHIPTA