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MS001549 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001549
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold119:132203..132538
RNA-Seq ExpressionMS001549
SyntenyMS001549
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4361768.1 hypothetical protein G4B88_012076 [Cannabis sativa]7.6e-0740.91Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGD----ELNWILEIRSLALDFDCVSFIYPPC
        +G+IIRDH GA + A + +I   LS LLAE   I  ALKLA +RS   + + SD Q V++ + GN     D      +WIL  +     F  +SFI+ P 
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGD----ELNWILEIRSLALDFDCVSFIYPPC

Query:  FCNFRAHYLA
         CN  AH LA
Subjt:  FCNFRAHYLA

KAF4383359.1 hypothetical protein G4B88_023933 [Cannabis sativa]9.9e-0741.28Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLAL---DFDCVSFIYPPCF
        +G+IIRDH GA + A + YI   LS L+AE   I  ALKLA +RS   + + SD Q VI  ++G      D   W + I    L   +F+ +SFI+ P  
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLAL---DFDCVSFIYPPCF

Query:  CNFRAHYLA
        CN  AH LA
Subjt:  CNFRAHYLA

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.9e-1664.1Show/hide
Query:  SSSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDEL
        S+ST +GLIIRDH G  +VAKS+++   L+PL AEIRGILEALKLA SRS  RL VESD Q+ IRL++G+L +MG+EL
Subjt:  SSSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDEL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.9e-1649.09Show/hide
Query:  SSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPC
        +ST  G IIRD   + + A SI +   LSPLLAEIR ILE LK A + +   LEVESD    I+LIR  +HT GDE NW++EI++L   F  +SF +   
Subjt:  SSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPC

Query:  FCNFRAHYLA
         CN  AH LA
Subjt:  FCNFRAHYLA

XP_030478193.1 uncharacterized protein LOC115695254 [Cannabis sativa]4.5e-0739.62Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPCFCNF
        +G+IIRDH G  + A + YIL  LS L+AE   I  ALKLA SRS   + + SD Q VI  ++G      D    + +    A +F+ +SF + P  CN 
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPCFCNF

Query:  RAHYLA
         AH  A
Subjt:  RAHYLA

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.3e-1664.1Show/hide
Query:  SSSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDEL
        S+ST +GLIIRDH G  +VAKS+++   L+PL AEIRGILEALKLA SRS  RL VESD Q+ IRL++G+L +MG+EL
Subjt:  SSSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDEL

A0A6J1DX30 uncharacterized protein LOC1110248743.3e-1649.09Show/hide
Query:  SSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPC
        +ST  G IIRD   + + A SI +   LSPLLAEIR ILE LK A + +   LEVESD    I+LIR  +HT GDE NW++EI++L   F  +SF +   
Subjt:  SSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPC

Query:  FCNFRAHYLA
         CN  AH LA
Subjt:  FCNFRAHYLA

A0A7J6ETR0 RNase H domain-containing protein3.7e-0740.91Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGD----ELNWILEIRSLALDFDCVSFIYPPC
        +G+IIRDH GA + A + +I   LS LLAE   I  ALKLA +RS   + + SD Q V++ + GN     D      +WIL  +     F  +SFI+ P 
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGD----ELNWILEIRSLALDFDCVSFIYPPC

Query:  FCNFRAHYLA
         CN  AH LA
Subjt:  FCNFRAHYLA

A0A7J6FK63 RNase H domain-containing protein4.8e-0741.28Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLAL---DFDCVSFIYPPCF
        +G+IIRDH GA + A + YI   LS L+AE   I  ALKLA +RS   + + SD Q VI  ++G      D   W + I    L   +F+ +SFI+ P  
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLAL---DFDCVSFIYPPCF

Query:  CNFRAHYLA
        CN  AH LA
Subjt:  CNFRAHYLA

A0A803Q1F8 Uncharacterized protein5.7e-0837.74Show/hide
Query:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPCFCNF
        +G+IIRDH GA + A+++++   LS LLAE   I  ALK+A   S  ++ + SD Q VI+ + GN  +  D  + +++       F  +SFI+ P  CN 
Subjt:  IGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPCFCNF

Query:  RAHYLA
         AH LA
Subjt:  RAHYLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTCTTCATCTACGAGAATCGGTCTGATAATCAGAGATCATGAGGGGGCCCCGATTGTAGCAAAATCAATTTACATTCTGCATCGGCTCTCGCCCCTTTTGGCCGAAAT
CAGAGGTATTTTGGAAGCACTGAAGCTTGCTCGATCCAGGAGTTGCGATCGTTTGGAAGTTGAATCTGATTATCAAGATGTTATTCGGTTGATTCGAGGAAATTTGCACA
CTATGGGTGATGAATTGAACTGGATTTTGGAAATCCGATCCTTAGCCTTAGATTTCGACTGTGTTTCTTTCATTTATCCTCCTTGTTTTTGCAATTTCAGGGCACACTAT
CTAGCT
mRNA sequenceShow/hide mRNA sequence
CATTCTTCATCTACGAGAATCGGTCTGATAATCAGAGATCATGAGGGGGCCCCGATTGTAGCAAAATCAATTTACATTCTGCATCGGCTCTCGCCCCTTTTGGCCGAAAT
CAGAGGTATTTTGGAAGCACTGAAGCTTGCTCGATCCAGGAGTTGCGATCGTTTGGAAGTTGAATCTGATTATCAAGATGTTATTCGGTTGATTCGAGGAAATTTGCACA
CTATGGGTGATGAATTGAACTGGATTTTGGAAATCCGATCCTTAGCCTTAGATTTCGACTGTGTTTCTTTCATTTATCCTCCTTGTTTTTGCAATTTCAGGGCACACTAT
CTAGCT
Protein sequenceShow/hide protein sequence
HSSSTRIGLIIRDHEGAPIVAKSIYILHRLSPLLAEIRGILEALKLARSRSCDRLEVESDYQDVIRLIRGNLHTMGDELNWILEIRSLALDFDCVSFIYPPCFCNFRAHY
LA