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MS001556 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001556
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S19
Genome locationscaffold119:285039..285182
RNA-Seq ExpressionMS001556
SyntenyMS001556
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002222 - Ribosomal protein S19/S15
IPR023575 - Ribosomal protein S19/S15, superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_003587230.1 ribosomal protein S19 [Citrullus lanatus]8.0e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
YP_003587264.1 ribosomal protein S19 [Citrullus lanatus]1.6e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
YP_003587364.1 ribosomal protein S19 [Cucurbita pepo]1.6e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
YP_003587380.1 ribosomal protein S19 [Cucurbita pepo]1.6e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
YP_009913640.1 ribosomal protein S19 [Luffa acutangula]6.1e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
TrEMBL top hitse value%identityAlignment
A0A7D6C0E4 Ribosomal protein S193.0e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
D5I3A0 Ribosomal protein S193.9e-0682.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
D5I3D4 Ribosomal protein S197.8e-0782.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
D5I3F0 Ribosomal protein S197.8e-0782.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
D5I3G6 Ribosomal protein S197.8e-0782.5Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVDSSVRIYNGKT+VRCKIT+GR   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
SwissProt top hitse value%identityAlignment
P27527 Ribosomal protein S19, mitochondrial8.9e-0875Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
        RKI SRRSSIL EFVD  VRIYNGKT+VRCKIT+G+   K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKK
P39697 40S ribosomal protein S19, mitochondrial5.8e-0757.89Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRK---------NKKTKKREKLK
        RKI SRRS+IL E+VDS+VRIYNGKT+VRCKIT+G+           +K KK  K K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRK---------NKKTKKREKLK
Arabidopsis top hitse value%identityAlignment
AT5G47320.1 ribosomal protein S194.1e-0857.89Show/hide
Query:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRK---------NKKTKKREKLK
        RKI SRRS+IL E+VDS+VRIYNGKT+VRCKIT+G+           +K KK  K K
Subjt:  RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRK---------NKKTKKREKLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAAATTCGATCACGTAGATCCTCAATTTTGTCGGAATTCGTTGATAGCTCTGTACGAATTTACAATGGAAAAACTTATGTTCGTTGTAAGATCACTAAAGGAAGGAA
AAATAAGAAAACAAAGAAAAGAGAGAAGCTCAAG
mRNA sequenceShow/hide mRNA sequence
AGGAAAATTCGATCACGTAGATCCTCAATTTTGTCGGAATTCGTTGATAGCTCTGTACGAATTTACAATGGAAAAACTTATGTTCGTTGTAAGATCACTAAAGGAAGGAA
AAATAAGAAAACAAAGAAAAGAGAGAAGCTCAAG
Protein sequenceShow/hide protein sequence
RKIRSRRSSILSEFVDSSVRIYNGKTYVRCKITKGRKNKKTKKREKLK