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MS001561 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001561
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold119:369788..370039
RNA-Seq ExpressionMS001561
SyntenyMS001561
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6340009.1 unnamed protein product [Miscanthus lutarioriparius]5.7e-1545.78Show/hide
Query:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        R  A  +G+ VG+F ++++D      G++LR++ ++D+ K LR G++  +GA   ERW PITYE LPDFCY CGR+GHV + C
Subjt:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.8e-1650Show/hide
Query:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        A  LGN +G FE ++S+ +  CWG  LRVR + DV K L RG+ + +       WIPI YE+LPDF Y CGRL H++KDC
Subjt:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.6e-1751.85Show/hide
Query:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE
        AI LGN +G F  +D +E G  WG +LR+R  ID++K LRRG+ I I       WIPI YE+LPDFCY CG +GH   DC+
Subjt:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.7e-1750.6Show/hide
Query:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        ++ AI +G  +G+F ++D + D    G+ LRV+ +I++ K LRRG+MI +G  A ERW PITYE LPDFCY CGR+GH  K C
Subjt:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]3.6e-1750.6Show/hide
Query:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        ++ AI +G  +G+F ++D + D    G+ LRV+ +I++ K LRRG+MI +G  A ERW PITYE LPDFCY CGR+GH  K C
Subjt:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein5.9e-1851.19Show/hide
Query:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE
        RK  +AL N +  FE+++  E  + +G+ L+VR +IDV +SL     IK+GAMA E+ IP+TYEKL DFCY CG LGHV+++CE
Subjt:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE

A0A1Z5S941 CCHC-type domain-containing protein3.6e-1545Show/hide
Query:  IALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE
        + LGN +G+   +D+++DG   G  LR++ +ID+ K L RG++++     D+ W PI YE LP+FCYGCG LGHV K+C+
Subjt:  IALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C3.6e-1540.96Show/hide
Query:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        +  A  LGN  G+F +++ D++G C G+ L VR  +D++K LRRG  ++IG+     W+   Y +LPDFC+ CG++GH + DC
Subjt:  RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054818.6e-1750Show/hide
Query:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC
        A  LGN +G FE ++S+ +  CWG  LRVR + DV K L RG+ + +       WIPI YE+LPDF Y CGRL H++KDC
Subjt:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDC

A0A6J1DU55 uncharacterized protein LOC1110231352.3e-1751.85Show/hide
Query:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE
        AI LGN +G F  +D +E G  WG +LR+R  ID++K LRRG+ I I       WIPI YE+LPDFCY CG +GH   DC+
Subjt:  AIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAGACAGCTATAGCTTTAGGAAATCTGGTAGGGAAATTTGAAAAGCTAGATTCCGATGAGGACGGGAAATGCTGGGGAAAAACTCTTCGAGTTAGATCTCAAATTGA
TGTTAGCAAATCCTTACGTAGAGGAGTAATGATAAAGATCGGTGCGATGGCGGATGAAAGATGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTG
GTAGACTTGGCCATGTGATAAAGGACTGTGAG
mRNA sequenceShow/hide mRNA sequence
AGGAAGACAGCTATAGCTTTAGGAAATCTGGTAGGGAAATTTGAAAAGCTAGATTCCGATGAGGACGGGAAATGCTGGGGAAAAACTCTTCGAGTTAGATCTCAAATTGA
TGTTAGCAAATCCTTACGTAGAGGAGTAATGATAAAGATCGGTGCGATGGCGGATGAAAGATGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTG
GTAGACTTGGCCATGTGATAAAGGACTGTGAG
Protein sequenceShow/hide protein sequence
RKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSQIDVSKSLRRGVMIKIGAMADERWIPITYEKLPDFCYGCGRLGHVIKDCE