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MS001566 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001566
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Genome locationscaffold119:436845..436979
RNA-Seq ExpressionMS001566
SyntenyMS001566
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR001280 - Photosystem I PsaA/PsaB
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG7870284.1 unnamed protein product [Brassica rapa]6.3e-1377.78Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLMLDKKDF Y+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
EEF47925.1 conserved hypothetical protein [Ricinus communis]3.4e-1480Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLMLDKKDF YNF +DGPG+ GTCDILAWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
PHT27384.1 Photosystem I chlorophyll a apoprotein A2 [Capsicum baccatum]8.3e-1377.78Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        G+LD RGSKLM DKKDF Y+FS DGPG+GGTCDILAWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
QVL25662.1 PSI P700 apoprotein A2 [Hymenopyramis cana]1.7e-1377.78Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDFCY+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
TYI69205.1 hypothetical protein E1A91_D08G138100v1 [Gossypium mustelinum]8.3e-1375.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F +DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
TrEMBL top hitse value%identityAlignment
A0A2G2V314 Photosystem I4.0e-1377.78Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        G+LD RGSKLM DKKDF Y+FS DGPG+GGTCDILAWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
A0A3B5ZT69 Photosystem I4.0e-1380Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWDTFYL IF
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
A0A3Q7J784 Photosystem I4.7e-1480Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLMLDKKDF Y+F  DGPG+GGTCDILAWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
A0A5D2TX01 Uncharacterized protein4.0e-1375.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F +DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
B9RL10 Uncharacterized protein1.6e-1480Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLMLDKKDF YNF +DGPG+ GTCDILAWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
SwissProt top hitse value%identityAlignment
A4QJB4 Photosystem I P700 chlorophyll a apoprotein A25.4e-1575.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
A4QJJ8 Photosystem I P700 chlorophyll a apoprotein A25.4e-1575.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
P58387 Photosystem I P700 chlorophyll a apoprotein A2 (Fragment)4.1e-1575.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD+FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
Q3V535 Photosystem I P700 chlorophyll a apoprotein A25.4e-1575.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
Q6B8U7 Photosystem I P700 chlorophyll a apoprotein A24.1e-1575.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD FYL++F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
Arabidopsis top hitse value%identityAlignment
ATCG00340.1 Photosystem I, PsaA/PsaB protein3.8e-1675.56Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        GALD RGSKLM DKKDF Y+F  DGPG+GGTCDI AWD FYL +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
ATCG00350.1 Photosystem I, PsaA/PsaB protein6.6e-0846.67Show/hide
Query:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF
        G L  R S+L+ DK +  + F  DGPG+GGTC + AWD  +L +F
Subjt:  GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTGCTTTAGATGTACGTGGTTCCAAATTAATGCTGGATAAAAAGGATTTTTGTTATAATTTTTCTTGGGACGGTCCGGGACAAGGTGGTACTTGTGATATTTTAGCTTG
GGACACCTTTTATTTGACAATTTTC
mRNA sequenceShow/hide mRNA sequence
GGTGCTTTAGATGTACGTGGTTCCAAATTAATGCTGGATAAAAAGGATTTTTGTTATAATTTTTCTTGGGACGGTCCGGGACAAGGTGGTACTTGTGATATTTTAGCTTG
GGACACCTTTTATTTGACAATTTTC
Protein sequenceShow/hide protein sequence
GALDVRGSKLMLDKKDFCYNFSWDGPGQGGTCDILAWDTFYLTIF