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MS001622 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001622
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit B-like
Genome locationscaffold377:2598..2892
RNA-Seq ExpressionMS001622
SyntenyMS001622
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5584663.1 hypothetical protein H5410_045097 [Solanum commersonii]6.4e-0646.88Show/hide
Query:  LKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        L+L +  GE  A +  FE+T+ L+GC V EY  +   +KKE  K YR+L LT+DK+Y FL+R+D
Subjt:  LKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

KGN51395.1 hypothetical protein Csa_008714 [Cucumis sativus]9.8e-0750Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKF
        ML+L +SDG+   +IT F++++ LIGC V+EY  ++   KKE SK+Y+ L L EDKKY F
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKF

OIT26151.1 hypothetical protein A4A49_29609 [Nicotiana attenuata]4.9e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL + D +   +IT FE+T+ L+GCDV  Y   I Q KKE SK YR+L  ++DK++ FL++LD
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

XP_009776017.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sylvestris]3.7e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL + D +   +IT FE+T+ L+GCDV+ Y   I Q KKE SK YR+L  ++DK++ FL++LD
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

XP_016500091.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum]2.9e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL V D +   ++T FEST  L+GCDV+ Y   I Q KKE SK YR+L L+ +K++ FL+++D
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

TrEMBL top hitse value%identityAlignment
A0A0A0KP46 Uncharacterized protein4.8e-0750Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKF
        ML+L +SDG+   +IT F++++ LIGC V+EY  ++   KKE SK+Y+ L L EDKKY F
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKF

A0A1J6KWZ0 Rep_fac-A_C domain-containing protein2.4e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL + D +   +IT FE+T+ L+GCDV  Y   I Q KKE SK YR+L  ++DK++ FL++LD
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

A0A1S4BU38 replication protein A 70 kDa DNA-binding subunit B-like1.8e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL + D +   +IT FE+T+ L+GCDV+ Y   I Q KKE SK YR+L  ++DK++ FL++LD
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like1.4e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL V D +   ++T FEST  L+GCDV+ Y   I Q KKE SK YR+L L+ +K++ FL+++D
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

A0A1U7W7M5 replication protein A 70 kDa DNA-binding subunit B-like1.8e-0647.69Show/hide
Query:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD
        +LKL + D +   +IT FE+T+ L+GCDV+ Y   I Q KKE SK YR+L  ++DK++ FL++LD
Subjt:  MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAACTTTTAGTTTCTGATGGAGAAATGGATGCACACATAACTGCTTTTGAGTCAACCGAAATGTTAATAGGATGTGACGTTTCTGAATATGCTACAGAAATTAT
ACAGATGAAGAAGGAGCATTCAAAGATTTATCGAAGGTTGACACTCACTGAAGATAAAAAATACAAATTCCTCATAAGATTAGAT
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAACTTTTAGTTTCTGATGGAGAAATGGATGCACACATAACTGCTTTTGAGTCAACCGAAATGTTAATAGGATGTGACGTTTCTGAATATGCTACAGAAATTAT
ACAGATGAAGAAGGAGCATTCAAAGATTTATCGAAGGTTGACACTCACTGAAGATAAAAAATACAAATTCCTCATAAGATTAGAT
Protein sequenceShow/hide protein sequence
MLKLLVSDGEMDAHITAFESTEMLIGCDVSEYATEIIQMKKEHSKIYRRLTLTEDKKYKFLIRLD