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MS001623 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001623
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReplication protein A subunit
Genome locationscaffold377:3873..4097
RNA-Seq ExpressionMS001623
SyntenyMS001623
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5512925.1 hypothetical protein RHGRI_038656 [Rhododendron griersonianum]4.2e-0948.65Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNF
        QGT+IQAV+FNDVI    ++  K  SYFI NG VKPVN +YANV++E+E+ L+ +  VE+ +  I L+  ++ F
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNF

KAG5520322.1 hypothetical protein RHGRI_033033 [Rhododendron griersonianum]4.2e-0948Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        QGT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS   +VEE +  I L   K++FI
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

KAG5520324.1 hypothetical protein RHGRI_033033 [Rhododendron griersonianum]4.2e-0948Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        QGT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS   +VEE +  I L   K++FI
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

KAG5560633.1 hypothetical protein RHGRI_003829 [Rhododendron griersonianum]4.2e-0948Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        QGT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS   +VEE +  I L   K++FI
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

KAG5563556.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]4.2e-0948Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        QGT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS   +VEE +  I L   K++FI
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

TrEMBL top hitse value%identityAlignment
A0A5J4ZGE1 DUF223 domain-containing protein2.7e-0640.54Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        GTKIQAVMFN+ + K     + +K+Y I NG VK  N K+ NV+  +EL L P  +V E       H+    F+
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

A0A5J4ZL87 Protein kinase domain-containing protein2.7e-0641.33Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        QGTKIQAVMFN  + K     + +K+Y I N  VK  N K+ANV+  +EL L P  +V E +     H+    F+
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

A0A5J4ZXX7 Protein kinase domain-containing protein2.7e-0640.54Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        GTKIQAVMFN+ + K     + +K+Y I NG VK  N K+ NV+  +EL L P  +V E       H+    F+
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

A0A5P1FUD9 DUF223 domain-containing protein (Fragment)3.6e-0641.33Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI
        +GT IQA++FN +IEK    + K ++Y I NG VKP N KY  +N E EL+L+    + E ++ + L  LK  F+
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like8.5e-0850Show/hide
Query:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIE
        +G  IQ  +FND+IEK G  +EK K+Y I +GN+KP++ +Y NV+ +IE+SLS + +V+EIE
Subjt:  QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGGAACAAAGATACAGGCGGTTATGTTTAATGATGTCATCGAAAAAATAGGAAAGAGTATGGAAAAAAATAAATCATACTTCATTCAAAATGGAAATGTAAAACCAGT
GAATAACAAATACGCGAATGTTAATCGTGAGATAGAACTAAGTCTATCTCCATCATTAGAGGTCGAAGAAATTGAAGAGTTTATTGGTTTACATATGTTGAAATTCAATT
TTATT
mRNA sequenceShow/hide mRNA sequence
CAGGGAACAAAGATACAGGCGGTTATGTTTAATGATGTCATCGAAAAAATAGGAAAGAGTATGGAAAAAAATAAATCATACTTCATTCAAAATGGAAATGTAAAACCAGT
GAATAACAAATACGCGAATGTTAATCGTGAGATAGAACTAAGTCTATCTCCATCATTAGAGGTCGAAGAAATTGAAGAGTTTATTGGTTTACATATGTTGAAATTCAATT
TTATT
Protein sequenceShow/hide protein sequence
QGTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSLEVEEIEEFIGLHMLKFNFI