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MS001624 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001624
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold377:6110..6523
RNA-Seq ExpressionMS001624
SyntenyMS001624
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]7.9e-1437.31Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PPT   +K+NS AAI  +   +G+G V+RD  G V +    C    + VD AEA+A+R SL + +E  F ++  ETD + VFS L       + LG++
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
        +++I  LAR  +   F+   R+ N  AH  AKL+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]6.0e-1440.3Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W  P    +K+NS AAI  + R +G+G V+RD  G V         GSF VD  EA+AMR +L + +E GF  +  ETD++ +   L  +KED +  GLI
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
          +I  LA S  E  F    R  N+VAH+ AKL+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

XP_021748387.1 uncharacterized protein LOC110714206 [Chenopodium quinoa]2.7e-1437.31Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W  P     KLNS AA   +GRR+ +G ++RD+EG   +T+     G F V   EA+AMR SL + +E GF   I ETD++ +F  L          G +
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
        V +I TL+R+ +   F+   R+ N  AH+ AKL+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]6.0e-1438.52Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PPT  + KLN+ A+I ++ RR G+G V+RD  G V MT+ +  +G+  + E EAVA+   +    + GF +L   +D + V  LL+  K + S   LI
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV
        V +I + A S    CF+ C R  NKVAH+ A L++
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV

XP_037480834.1 uncharacterized protein LOC119358354 [Triticum dicoccoides]1.0e-1335.07Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W+PP    +K+N  A I  + +R+G+G VIR+  G V        H     +  EA+AMR +L    + GF +++ ETD   + + + SK +DRS  G +
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
        + +IK+ A      CFTH  R+ N+ AH  AK A
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

TrEMBL top hitse value%identityAlignment
A0A2N9I239 RNase H domain-containing protein1.0e-1435.56Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PPT  + K N  AA+        +G VIRD  G    T  +  HG   VD+AEA+A+R+++ +  ++G  E+  E DS+++F+ L  ++E  +  G I
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV
        + +I  LA SL    F+H  R  N+VAH  A+ A+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV

A0A2N9IFR8 RNase H domain-containing protein1.0e-1435.56Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PPT  + K N  AA+        +G VIRD  G    T  +  HG   VD+AEA+A+R+++ +  ++G  E+  E DS+++F+ L  ++E  +  G I
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV
        + +I  LA SL    F+H  R  N+VAH  A+ A+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV

A0A7N2M5F5 RNase H domain-containing protein1.5e-1338.06Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PP     KLN  AA   E    G G +IR+  G V +  L       T DEAEA+A R +L  +I+ GF ELINE D+  V   + S   +RS LG+I
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
        + + K L   ++        R  NKVAH  A+ A
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

A0A803L9N8 Uncharacterized protein2.9e-1438.52Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PPT  + KLN+ A+I ++ RR G+G V+RD  G V MT+ +  +G+  + E EAVA+   +    + GF +L   +D + V  LL+  K + S   LI
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV
        V +I + A S    CF+ C R  NKVAH+ A L++
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLAV

A0A803MB59 Uncharacterized protein2.9e-1435.82Show/hide
Query:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI
        W PP    +K+NS AAI      +G+G ++RDK G V  +   C  G + VD AEA+A+R +L++++++GF ++  ETD + + S L       + +G++
Subjt:  WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLI

Query:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA
        V++I  LAR      F+   R+ N VAH  AKL+
Subjt:  VHEIKTLARSLREACFTHCLRNDNKVAHTTAKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAATCCACCAACTGGTTTCCAACTGAAATTAAATTCATATGCAGCTATTAGAACAGAGGGAAGACGAATTGGTATGGGAACAGTAATTAGAGACAAAGAGGGTGCTGT
GTACATGACCTTTCTGCAGTGTAGGCATGGATCGTTCACTGTTGATGAGGCTGAGGCTGTGGCCATGCGTGACAGTTTGAGCATGACAATCGAGATGGGTTTCACCGAAT
TGATTAATGAGACCGATTCCGTTATCGTTTTCTCCCTGCTTCACTCAAAGAAGGAAGATCGCTCTCAATTAGGTTTGATTGTCCATGAAATCAAAACCCTAGCGAGGAGT
TTAAGGGAGGCGTGTTTTACTCACTGCCTTAGAAATGACAATAAGGTGGCGCACACAACGGCGAAGCTAGCAGTGGAAGAGAAT
mRNA sequenceShow/hide mRNA sequence
TGGAATCCACCAACTGGTTTCCAACTGAAATTAAATTCATATGCAGCTATTAGAACAGAGGGAAGACGAATTGGTATGGGAACAGTAATTAGAGACAAAGAGGGTGCTGT
GTACATGACCTTTCTGCAGTGTAGGCATGGATCGTTCACTGTTGATGAGGCTGAGGCTGTGGCCATGCGTGACAGTTTGAGCATGACAATCGAGATGGGTTTCACCGAAT
TGATTAATGAGACCGATTCCGTTATCGTTTTCTCCCTGCTTCACTCAAAGAAGGAAGATCGCTCTCAATTAGGTTTGATTGTCCATGAAATCAAAACCCTAGCGAGGAGT
TTAAGGGAGGCGTGTTTTACTCACTGCCTTAGAAATGACAATAAGGTGGCGCACACAACGGCGAAGCTAGCAGTGGAAGAGAAT
Protein sequenceShow/hide protein sequence
WNPPTGFQLKLNSYAAIRTEGRRIGMGTVIRDKEGAVYMTFLQCRHGSFTVDEAEAVAMRDSLSMTIEMGFTELINETDSVIVFSLLHSKKEDRSQLGLIVHEIKTLARS
LREACFTHCLRNDNKVAHTTAKLAVEEN