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MS001625 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001625
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold377:10994..11197
RNA-Seq ExpressionMS001625
SyntenyMS001625
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER41574.1 cellular nucleic acid-binding protein [Striga asiatica]2.5e-1348.53Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        EVD+   G +WG+FARVR+ + ++ PL + V  ++E + + + IL+ YE+LPDFCY CG+IGH  KEC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

XP_004293574.1 PREDICTED: uncharacterized protein LOC101304253 isoform X1 [Fragaria vesca subsp. vesca]6.2e-1245.59Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        EV++   G+ WGK+ R+R+++DV  PL R ++  +EG  EP+W+  +YE +P+FCY CG  GHN+ EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

XP_011460179.1 PREDICTED: uncharacterized protein LOC101304253 isoform X2 [Fragaria vesca subsp. vesca]6.2e-1245.59Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        EV++   G+ WGK+ R+R+++DV  PL R ++  +EG  EP+W+  +YE +P+FCY CG  GHN+ EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]7.3e-1350Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        +VD N  G  WG   R+R+ ID+T PL R ++  I+G +   WI IQYE+LPDFCY CG IGH+  +C
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

XP_030964252.1 uncharacterized protein LOC115985457 [Quercus lobata]5.6e-1351.47Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        +VD +  G  WG++ RVRI++DVT  L R  +  IE   EP W+  QYE+LP+FCY CGKIGH+++EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

TrEMBL top hitse value%identityAlignment
A0A2N9E949 CCHC-type domain-containing protein2.7e-1350Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        E+D    G  WG+F RV+++IDV++PL RR R K+ G+ E +W+ ++YEKLP FCY CG +GH+++EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

A0A2N9G3M9 CCHC-type domain-containing protein2.7e-1350Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        E+D    G  WG+F RV+++IDV++PL RR R K+ G+ E +W+ ++YEKLP FCY CG +GH+++EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

A0A2N9H4E7 Uncharacterized protein6.1e-1348.53Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        E+D   +G  WG+F R+R+++D+T PL RR   K+ G+  P+WI ++YEKLP FCY CG++GH+ +EC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

A0A5A7Q953 Cellular nucleic acid-binding protein1.2e-1348.53Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        EVD+   G +WG+FARVR+ + ++ PL + V  ++E + + + IL+ YE+LPDFCY CG+IGH  KEC
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

A0A6J1DU55 uncharacterized protein LOC1110231353.6e-1350Show/hide
Query:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC
        +VD N  G  WG   R+R+ ID+T PL R ++  I+G +   WI IQYE+LPDFCY CG IGH+  +C
Subjt:  EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGTTGATCAGAATGCTAGCGGAAAGTATTGGGGAAAGTTTGCAAGAGTGCGAATAAAGATTGATGTAACAGTACCCCTGCACCGTAGAGTGAGAGCTAAGATTGAAGG
AAGGTTAGAGCCTTTATGGATTCTCATCCAATATGAAAAATTACCTGATTTTTGCTACTGTTGTGGCAAAATAGGGCATAACAAGAAAGAATGT
mRNA sequenceShow/hide mRNA sequence
GAGGTTGATCAGAATGCTAGCGGAAAGTATTGGGGAAAGTTTGCAAGAGTGCGAATAAAGATTGATGTAACAGTACCCCTGCACCGTAGAGTGAGAGCTAAGATTGAAGG
AAGGTTAGAGCCTTTATGGATTCTCATCCAATATGAAAAATTACCTGATTTTTGCTACTGTTGTGGCAAAATAGGGCATAACAAGAAAGAATGT
Protein sequenceShow/hide protein sequence
EVDQNASGKYWGKFARVRIKIDVTVPLHRRVRAKIEGRLEPLWILIQYEKLPDFCYCCGKIGHNKKEC