CuGenDBv2

Gene ID	MS001633
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transportin-3 isoform X1
Genome location	scaffold377:96689..97000
RNA-Seq Expression	MS001633
Synteny	MS001633
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008449960.1 PREDICTED: transportin-3 isoform X2 [Cucumis melo]

1.5e-14

58.1

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   +  I  +Y+   EPD++EA+   A I +R  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

XP_011651344.1 transportin-3 isoform X3 [Cucumis sativus]

1.5e-14

58.1

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   +  I  +Y+   EPD++EA+   A I +R  HK  LAA+GSLLEVSFQK A   T MH GA LA MSYL CFLDVSL SIL
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

XP_022148142.1 transportin-3 isoform X1 [Momordica charantia]

2.4e-15

59.05

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

XP_022148144.1 transportin-3 isoform X2 [Momordica charantia]

2.4e-15

59.05

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

XP_022148146.1 transportin MOS14 isoform X3 [Momordica charantia]

2.4e-15

59.05

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BN70 transportin-3 isoform X1

7.4e-15

58.1

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   +  I  +Y+   EPD++EA+   A I +R  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

A0A5A7U2P7 Transportin-3 isoform X1

7.4e-15

58.1

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   +  I  +Y+   EPD++EA+   A I +R  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

A0A6J1D347 transportin-3 isoform X2

1.1e-15

59.05

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

A0A6J1D496 transportin-3 isoform X1

1.1e-15

59.05

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

A0A6J1D4H9 transportin MOS14 isoform X3

1.1e-15

59.05

Show/hide

Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL
        G LF+T F RFTYA S   ++ I  +Y+   EPD++EA+   A I IR  HK  LAASGSLLEVSFQK A   T MH GA LA MSYL CFLDVSL S+L
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYL-CFLDVSLTSIL

Query:  ETSST
        E +ST
Subjt:  ETSST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12930.1 ARM repeat superfamily protein

1.6e-14

51.96

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Query:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYLC-FLDVSLTSIL
        G LF+T F RFT A+S   L+ I  +Y+   EPD++EA+   A   IRS HK  L  SG+LLE+SF K A   T MH GA LA MSYL  FL+VSL+S++
Subjt:  GFLFMTHFHRFTYATSFIFLLLIPCTYV--TEPDMMEAH-KVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYLC-FLDVSLTSIL

Query:  ET
        ET
Subjt:  ET

Sequences

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CDS sequence

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ATGGGCTTTTTGTTTATGACCCATTTTCATAGGTTTACATACGCAACATCTTTTATTTTCTTATTGTTGATACCTTGTACTTATGTGACTGAACCTGATATGATGGAGGC
TCACAAAGTTGCATATATTTCTATCCGAAGTCTCCATAAGGGAACATTAGCTGCATCCGGTTCTCTTTTGGAGGTTTCCTTCCAGAAGGTTGCTAAAGGTAGCACAACCA
TGCATCACGGGGCAGTTTTAGCAACAATGTCATACTTATGTTTCTTGGATGTTAGCCTAACTTCAATATTGGAAACTTCAAGTACC

mRNA sequence

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Protein sequence

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MGFLFMTHFHRFTYATSFIFLLLIPCTYVTEPDMMEAHKVAYISIRSLHKGTLAASGSLLEVSFQKVAKGSTTMHHGAVLATMSYLCFLDVSLTSILETSST

MS001633 (gene) of Bitter gourd (TR) v1 genome