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MS001664 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001664
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold571:36393..36548
RNA-Seq ExpressionMS001664
SyntenyMS001664
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062610.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]7.6e-1073.81Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        W RE  NK+DTLQ GRNCK+ C+TLDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
KAE8653635.1 hypothetical protein Csa_006994 [Cucumis sativus]4.4e-1076.19Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRE  NKIDTLQ GRNCK+ C+ LDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
XP_011648557.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus]4.4e-1076.19Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRE  NKIDTLQ GRNCK+ C+ LDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
XP_022145063.1 putative E3 ubiquitin-protein ligase LIN-1 [Momordica charantia]1.3e-1497.62Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRENQNKIDTLQTGRNCKVDC+TLDEKEEVLVVGTSEGRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
XP_038879119.1 putative E3 ubiquitin-protein ligase LIN-1 [Benincasa hispida]2.0e-1078.57Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRE  NKIDTLQTGRNCK+ C+TLDE+EEVLV+GTS+G IQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
TrEMBL top hitse value%identityAlignment
A0A0A0M114 RING-type E3 ubiquitin transferase2.2e-1076.19Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRE  NKIDTLQ GRNCK+ C+ LDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
A0A1S4E4L5 RING-type E3 ubiquitin transferase3.7e-1073.81Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        W RE  NK+DTLQ GRNCK+ C+TLDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
A0A5A7V5V1 RING-type E3 ubiquitin transferase3.7e-1073.81Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        W RE  NK+DTLQ GRNCK+ C+TLDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
A0A5D3E2B9 RING-type E3 ubiquitin transferase3.7e-1073.81Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        W RE  NK+DTLQ GRNCK+ C+TLDE+EEVLV+GTS+GRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
A0A6J1CUY0 RING-type E3 ubiquitin transferase6.5e-1597.62Show/hide
Query:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
        WSRENQNKIDTLQTGRNCKVDC+TLDEKEEVLVVGTSEGRIQ
Subjt:  WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAGCAGGGAAAATCAAAACAAAATAGACACACTTCAAACTGGTAGAAACTGCAAGGTTGATTGTATAACTCTCGACGAAAAGGAGGAAGTTCTGGTTGTTGGAACGTC
TGAGGGTCGGATTCAGGTAAGATTATTTCATCTATTCCAGACCGGT
mRNA sequenceShow/hide mRNA sequence
TGGAGCAGGGAAAATCAAAACAAAATAGACACACTTCAAACTGGTAGAAACTGCAAGGTTGATTGTATAACTCTCGACGAAAAGGAGGAAGTTCTGGTTGTTGGAACGTC
TGAGGGTCGGATTCAGGTAAGATTATTTCATCTATTCCAGACCGGT
Protein sequenceShow/hide protein sequence
WSRENQNKIDTLQTGRNCKVDCITLDEKEEVLVVGTSEGRIQVRLFHLFQTG