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MS001705 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001705
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAP-5 complex subunit mu
Genome locationscaffold571:386416..386577
RNA-Seq ExpressionMS001705
SyntenyMS001705
Gene Ontology termsGO:0016197 - endosomal transport (biological process)
GO:0005764 - lysosome (cellular component)
GO:0005770 - late endosome (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030119 - AP-type membrane coat adaptor complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593929.1 AP-5 complex subunit mu, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1683.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
XP_022138820.1 LOW QUALITY PROTEIN: AP-5 complex subunit mu [Momordica charantia]9.3e-1992.73Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVERRWRTACKT+NDQCISDDLTSSVSPILPNDSELAAALVERKKR
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
XP_023000243.1 AP-5 complex subunit mu [Cucurbita maxima]1.5e-1683.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
XP_023515067.1 AP-5 complex subunit mu [Cucurbita pepo subsp. pepo]1.5e-1683.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
XP_038875799.1 AP-5 complex subunit mu [Benincasa hispida]3.0e-1785.45Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVERRWRTACKTEND+C SDD+TSSVSP+LPNDSELAAA VERKKR
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
TrEMBL top hitse value%identityAlignment
A0A5A7SVG1 AP-5 complex subunit mu2.7e-1681.82Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVERRWRTACK END+C SDD+TS+VSP+LPNDSELAAA VERKKR
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
A0A6J1CAK7 LOW QUALITY PROTEIN: AP-5 complex subunit mu4.5e-1992.73Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVERRWRTACKT+NDQCISDDLTSSVSPILPNDSELAAALVERKKR
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
A0A6J1EPV4 AP-5 complex subunit mu isoform X27.2e-1783.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
A0A6J1EQE7 AP-5 complex subunit mu isoform X17.2e-1783.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
A0A6J1KM34 AP-5 complex subunit mu7.2e-1783.64Show/hide
Query:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        A++F RRFPVVE+RWRTACKTEND+CISDDL SSVSP+LPNDSELAAA VERK R
Subjt:  ALLF-RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20790.1 clathrin adaptor complexes medium subunit family protein4.0e-0442Show/hide
Query:  RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR
        RRFPVVE++W +A KTEN+       T    P LP D +++ +   RK+R
Subjt:  RRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCTACTTTTCAGGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACTGAGAATGATCAATGTATTTCAGATGACCTTACATCGAGCGTATCTCCGAT
ACTTCCTAATGATTCAGAGTTAGCTGCTGCGCTTGTTGAGAGAAAGAAGAGG
mRNA sequenceShow/hide mRNA sequence
GCTCTACTTTTCAGGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACTGAGAATGATCAATGTATTTCAGATGACCTTACATCGAGCGTATCTCCGAT
ACTTCCTAATGATTCAGAGTTAGCTGCTGCGCTTGTTGAGAGAAAGAAGAGG
Protein sequenceShow/hide protein sequence
ALLFRRFPVVERRWRTACKTENDQCISDDLTSSVSPILPNDSELAAALVERKKR