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MS001711 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001711
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRab3 GTPase-activating protein catalytic subunit
Genome locationscaffold571:416850..417182
RNA-Seq ExpressionMS001711
SyntenyMS001711
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4263812.1 unnamed protein product [Prunus armeniaca]4.1e-0558.33Show/hide
Query:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI
        DTCFFFENDG+G  LG G+  NADPAY S     G   STIR CF  +
Subjt:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI

CAB4294401.1 unnamed protein product [Prunus armeniaca]1.2e-0458.33Show/hide
Query:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI
        DTCFFFENDG+G  L   D  NADPAY S     G   STIR CFG +
Subjt:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI

EEF45445.1 conserved hypothetical protein [Ricinus communis]3.8e-1961.86Show/hide
Query:  VDTCFFFENDGNGRELGDGDMENADPAYTSE---IGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFR----ASLLIFESSDSPRLNIVTFSITK
        + TCFF E DGNG ELG GD    DPAY S    IG L STIRIC GTISG+GP+ SVP TT   PSF R    + +LI ESSDSPR  IVTFSIT+
Subjt:  VDTCFFFENDGNGRELGDGDMENADPAYTSE---IGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFR----ASLLIFESSDSPRLNIVTFSITK

GER30167.1 Rab3 GTPase-activating protein catalytic subunit [Striga asiatica]7.0e-0547.73Show/hide
Query:  FENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISG-AGPNLSVPHTTKLSPSFFRASLLI--FESSDSPRLNIVTFSITKL
        F  +G GR  GDGD E ADPAYTS         RICFG ISG +GP   VP     S  F     ++   ESSDSP L  VT  IT+L
Subjt:  FENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISG-AGPNLSVPHTTKLSPSFFRASLLI--FESSDSPRLNIVTFSITKL

KAG0501127.1 hypothetical protein HPP92_001199 [Vanilla planifolia]3.4e-0746.15Show/hide
Query:  FFENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISGAGPNLS-------VPHTTKLSPSFFRASLLIFESSDSPRLNIVTFSIT
        FFEN+G+G +LG+GD EN+DPAY+S       T RI  G  SG+G   S       VP TT L PS F +++    SS SP  +IVTF I+
Subjt:  FFENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISGAGPNLS-------VPHTTKLSPSFFRASLLIFESSDSPRLNIVTFSIT

TrEMBL top hitse value%identityAlignment
A0A0A0K9L3 Uncharacterized protein2.1e-4788.6Show/hide
Query:  MVDTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFRASLLIFESSDSPRLNIVTFSITKLFFIAF
        M DTCFFFENDGNGRELGDGD+ENADPAYTS    IG  TSTIRICF T+SGAGPNLSVPHTT LSPSFFRASLLIFES DSPRL IVTFSITKLFFIAF
Subjt:  MVDTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFRASLLIFESSDSPRLNIVTFSITKLFFIAF

Query:  KSSELDLFETDGSE
        KSSELDLFETDGSE
Subjt:  KSSELDLFETDGSE

A0A5A7PD28 Rab3 GTPase-activating protein catalytic subunit3.4e-0547.73Show/hide
Query:  FENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISG-AGPNLSVPHTTKLSPSFFRASLLI--FESSDSPRLNIVTFSITKL
        F  +G GR  GDGD E ADPAYTS         RICFG ISG +GP   VP     S  F     ++   ESSDSP L  VT  IT+L
Subjt:  FENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISG-AGPNLSVPHTTKLSPSFFRASLLI--FESSDSPRLNIVTFSITKL

A0A6J5TJT7 Uncharacterized protein2.0e-0558.33Show/hide
Query:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI
        DTCFFFENDG+G  LG G+  NADPAY S     G   STIR CF  +
Subjt:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI

A0A6J5W2A6 Uncharacterized protein5.8e-0558.33Show/hide
Query:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI
        DTCFFFENDG+G  L   D  NADPAY S     G   STIR CFG +
Subjt:  DTCFFFENDGNGRELGDGDMENADPAYTS---EIGHLTSTIRICFGTI

B9RSW2 Uncharacterized protein1.9e-1961.86Show/hide
Query:  VDTCFFFENDGNGRELGDGDMENADPAYTSE---IGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFR----ASLLIFESSDSPRLNIVTFSITK
        + TCFF E DGNG ELG GD    DPAY S    IG L STIRIC GTISG+GP+ SVP TT   PSF R    + +LI ESSDSPR  IVTFSIT+
Subjt:  VDTCFFFENDGNGRELGDGDMENADPAYTSE---IGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFR----ASLLIFESSDSPRLNIVTFSITK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATACCTGTTTCTTCTTCGAGAACGACGGCAATGGAAGAGAGCTTGGAGACGGCGACATGGAGAACGCCGATCCGGCGTACACGTCGGAAATCGGACACCTGAC
GTCGACGATCCGGATCTGCTTCGGAACCATTTCCGGCGCCGGCCCCAACCTTTCCGTCCCGCACACGACCAAATTATCGCCTTCCTTCTTCAGGGCCTCGCTCTTGATCT
TCGAATCGAGCGATTCACCTCGCCTCAATATCGTCACCTTCTCCATCACCAAACTATTCTTCATCGCCTTCAAGTCGTCGGAACTCGATCTCTTCGAGACCGACGGCTCC
GAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATACCTGTTTCTTCTTCGAGAACGACGGCAATGGAAGAGAGCTTGGAGACGGCGACATGGAGAACGCCGATCCGGCGTACACGTCGGAAATCGGACACCTGAC
GTCGACGATCCGGATCTGCTTCGGAACCATTTCCGGCGCCGGCCCCAACCTTTCCGTCCCGCACACGACCAAATTATCGCCTTCCTTCTTCAGGGCCTCGCTCTTGATCT
TCGAATCGAGCGATTCACCTCGCCTCAATATCGTCACCTTCTCCATCACCAAACTATTCTTCATCGCCTTCAAGTCGTCGGAACTCGATCTCTTCGAGACCGACGGCTCC
GAG
Protein sequenceShow/hide protein sequence
MVDTCFFFENDGNGRELGDGDMENADPAYTSEIGHLTSTIRICFGTISGAGPNLSVPHTTKLSPSFFRASLLIFESSDSPRLNIVTFSITKLFFIAFKSSELDLFETDGS
E