; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001729 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001729
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclassical arabinogalactan protein 25
Genome locationscaffold571:527867..528292
RNA-Seq ExpressionMS001729
SyntenyMS001729
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3568.31Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMAFMAS LLALP  SL NPK S                  S FQELSP+IAPLLPS GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSP GLPGSFA P +LP YSNSLLLL   +L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

XP_022138732.1 classical arabinogalactan protein 25 [Momordica charantia]8.8e-69100Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
        PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]1.4e-3467.61Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMA MAS LLALP  SL NPK S                  S FQELSP+IAPLLPS GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSP GLPGSFA P  LP YSNSLLLL   +L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]1.7e-3571.83Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMAFMAS LLALP  SL NPK       SPS            FQELSP+IAPLLPS GGNIPSATGSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSPFGLPGSFA P  LP YSNSLLL A S L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]5.8e-3669.01Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMAFMAS LLALP  SL NPK S                  S FQELSP+IAPLLPS GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSPFGLPGSFA P  LP YSNSLLLL   +L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

TrEMBL top hitse value%identityAlignment
A0A0A0KBF8 Uncharacterized protein6.9e-3567.36Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATG-SIPTIPSNPSPPNPDEFEAPAP
        MASFWYCSA+IM FMAS LLALPS                      +P+P SPFQELSPEIAPLLPS G  IPSATG SIPTIPSNPSPPNPD+FEA  P
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATG-SIPTIPSNPSPPNPDEFEAPAP

Query:  DPSALSPFGLPGSFAPPTALPWYSN-SLLLLAGSALFLFSLPLH
        D SALSPFGLPGSFAPP +LP YSN  LLLL G AL  FS+ LH
Subjt:  DPSALSPFGLPGSFAPPTALPWYSN-SLLLLAGSALFLFSLPLH

A0A5A7SSC0 Classical arabinogalactan protein 256.9e-3567.36Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATG-SIPTIPSNPSPPNPDEFEAPAP
        MASFWYCSA+IM FMAS LLALPS                      +P+P SPFQELSPEIAPLLPS G  IPSATG SIPTIPSNPSPPNPD+FEA  P
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATG-SIPTIPSNPSPPNPDEFEAPAP

Query:  DPSALSPFGLPGSFAPPTALPWYSN-SLLLLAGSALFLFSLPLH
        D SALSPFGLPGSFAPP +LP YSN  LLLL G AL  FS+ LH
Subjt:  DPSALSPFGLPGSFAPPTALPWYSN-SLLLLAGSALFLFSLPLH

A0A6J1CBZ0 classical arabinogalactan protein 254.3e-69100Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
        PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

A0A6J1H4T0 classical arabinogalactan protein 25-like6.9e-3567.61Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMA MAS LLALP  SL NPK S                  S FQELSP+IAPLLPS GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSP GLPGSFA P  LP YSNSLLLL   +L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

A0A6J1KVY5 classical arabinogalactan protein 25-like8.2e-3671.83Show/hide
Query:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD
        MASFWYC+A+IMAFMAS LLALP  SL NPK       SPS            FQELSP+IAPLLPS GGNIPSATGSIPTIPSNPSPPNPDEFEAP PD
Subjt:  MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPD

Query:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH
         SALSPFGLPGSFA P  LP YSNSLLL A S L  F L LH
Subjt:  PSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 251.9e-1052.63Show/hide
Query:  TNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL
        ++S   IS  Q+LSPEIAPLLPSPG  +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   S +PP +LP     L+ L+  SA FL
Subjt:  TNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL

Arabidopsis top hitse value%identityAlignment
AT5G18690.1 arabinogalactan protein 251.4e-1152.63Show/hide
Query:  TNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL
        ++S   IS  Q+LSPEIAPLLPSPG  +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   S +PP +LP     L+ L+  SA FL
Subjt:  TNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCTTTTGGTATTGTTCAGCACTCATTATGGCTTTCATGGCCTCAACTTTGCTAGCTTTACCATCTGACTCTCTACACAATCCAAAATCCTCCACCATAATCTC
AGCCTCTCCATCACTTTTTACCACCAATTCTCCACAACCCATCTCCCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCCTCTCCAGGCGGTAACATTCCTT
CTGCAACTGGCTCCATTCCCACCATTCCCTCCAACCCAAGCCCTCCCAATCCAGACGAGTTCGAGGCGCCCGCCCCCGATCCCTCGGCCCTCTCGCCATTTGGGCTTCCA
GGTTCCTTCGCACCGCCCACAGCCCTGCCTTGGTATTCAAATTCGCTCCTTCTTCTTGCTGGCTCAGCACTATTTCTCTTCTCTCTGCCGTTACAT
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCTTTTGGTATTGTTCAGCACTCATTATGGCTTTCATGGCCTCAACTTTGCTAGCTTTACCATCTGACTCTCTACACAATCCAAAATCCTCCACCATAATCTC
AGCCTCTCCATCACTTTTTACCACCAATTCTCCACAACCCATCTCCCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCCTCTCCAGGCGGTAACATTCCTT
CTGCAACTGGCTCCATTCCCACCATTCCCTCCAACCCAAGCCCTCCCAATCCAGACGAGTTCGAGGCGCCCGCCCCCGATCCCTCGGCCCTCTCGCCATTTGGGCTTCCA
GGTTCCTTCGCACCGCCCACAGCCCTGCCTTGGTATTCAAATTCGCTCCTTCTTCTTGCTGGCTCAGCACTATTTCTCTTCTCTCTGCCGTTACAT
Protein sequenceShow/hide protein sequence
MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLP
GSFAPPTALPWYSNSLLLLAGSALFLFSLPLH