CuGenDBv2

Gene ID	MS001733
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold571:560000..560194
RNA-Seq Expression	MS001733
Synteny	MS001733
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF8098591.1 hypothetical protein N665_0263s0020 [Sinapis alba]

1.3e-19

73.85

Show/hide

Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FAD++M KELL  QTD  TS+YKCWFIKNM  K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

QGW14986.1 hypothetical chloroplast RF21 [Hippophae tibetana]

5.0e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

QVX30535.1 hypothetical protein RF2 [Myroxylon balsamum]

2.9e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M + LL +QTDLSTSMYK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

YP_009310695.1 Ycf2 [Torricellia angulata]

5.0e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

YP_009872568.1 hypothetical chloroplast RF21 [Hippophae rhamnoides subsp. sinensis]

5.0e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

TrEMBL top hits

e value

%identity

Alignment

A0A2I4SMN1 Protein Ycf2

2.4e-19

73.85

Show/hide

Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

A0A346QMB6 Protein Ycf2

2.4e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

A0A4Y5PR37 Protein Ycf2

2.4e-19

72.31

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRI+QFIW+P+DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

A0A6H1YIL4 Protein Ycf2

2.4e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

A0A7D5A4K0 Protein Ycf2

2.4e-19

73.85

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

SwissProt top hits

e value

%identity

Alignment

A4GGE1 Protein Ycf2

1.6e-20

69.23

Show/hide

Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH++ F DE+M +ELL  QTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Q09WV7 Protein Ycf2

7.3e-21

72.31

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL  QTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Q2PMM5 Protein Ycf2

1.6e-20

69.23

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH++ F DE+M +ELL  QTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Q49KT6 Protein Ycf2

3.6e-20

70.77

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL  QTD  TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Q9B1K6 Protein Ycf2

5.6e-21

70.77

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Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE++ + LL FQTDL TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.4e-21

70.77

Show/hide

Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL  QTD  TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.4e-21

70.77

Show/hide

Query:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK
        FRISQFIW+P DPLFFL KDQPF+S+FSH+E FADE+M K LL  QTD  TS+YK WFIKN   K
Subjt:  FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

Sequences

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CDS sequence

Show/hide CDS sequence

TTTCGAATAAGTCAATTCATTTGGAATCCCATAGATCCACTATTTTTCCTAGTTAAAGATCAACCTTTTATTTCTATGTTTTCACATCAAGAATTATTTGCAGACGAAGA
TATGTTAAAGGAGCTGCTTAGGTTCCAAACAGATCTTTCTACATCTATGTATAAATGCTGGTTTATCAAGAATATGACTAGGAAG

mRNA sequence

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TTTCGAATAAGTCAATTCATTTGGAATCCCATAGATCCACTATTTTTCCTAGTTAAAGATCAACCTTTTATTTCTATGTTTTCACATCAAGAATTATTTGCAGACGAAGA
TATGTTAAAGGAGCTGCTTAGGTTCCAAACAGATCTTTCTACATCTATGTATAAATGCTGGTTTATCAAGAATATGACTAGGAAG

Protein sequence

Show/hide protein sequence

FRISQFIWNPIDPLFFLVKDQPFISMFSHQELFADEDMLKELLRFQTDLSTSMYKCWFIKNMTRK

MS001733 (gene) of Bitter gourd (TR) v1 genome