; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001821 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001821
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold30:233913..234224
RNA-Seq ExpressionMS001821
SyntenyMS001821
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]1.0e-0530Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW
        W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F ++        +   L A+ WC SL   F NY++  I  NW
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW

RVW36770.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.1e-0531.71Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF
        W  LF +  + +  LKSI D +     G   + R   LW   ++A +W +W ERN R F+++  N  + W+ +   AS W F
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF

RVW96981.1 hypothetical protein CK203_032271 [Vitis vinifera]3.0e-0531.71Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF
        W  LF +  + +   +SI D +     G   + R   LW  T++A +W +W ERN R F+N+  N ++ W+ V   AS W +
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF

RWR92932.1 hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae]4.6e-0630.39Show/hide
Query:  AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQ
        + W        V +C  + I + + ++ +GGCF    + LW  T  A LW++W ERN R F+        F + + LT ++W       F N++L  IL 
Subjt:  AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQ

Query:  NW
        NW
Subjt:  NW

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]1.0e-0530Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW
        W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F ++        +   L A+ WC SL   F NY++  I  NW
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW

TrEMBL top hitse value%identityAlignment
A0A3S3R1F6 Uncharacterized protein2.2e-0630.39Show/hide
Query:  AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQ
        + W        V +C  + I + + ++ +GGCF    + LW  T  A LW++W ERN R F+        F + + LT ++W       F N++L  IL 
Subjt:  AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQ

Query:  NW
        NW
Subjt:  NW

A0A438IJU8 Uncharacterized protein1.4e-0531.71Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF
        W  LF +  + +   +SI D +     G   + R   LW  T++A +W +W ERN R F+N+  N ++ W+ V   AS W +
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCF

A0A5A7T2Y0 zf-RVT domain-containing protein4.9e-0630Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW
        W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F ++        +   L A+ WC SL   F NY++  I  NW
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW

A0A5D3DE60 zf-RVT domain-containing protein4.9e-0630Show/hide
Query:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW
        W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F ++        +   L A+ WC SL   F NY++  I  NW
Subjt:  WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW

A0A803QEA6 Uncharacterized protein1.1e-0526.92Show/hide
Query:  AQAAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVI
        A + W  L N F + + +  S+D  L+  + G   + R+ SLW  T ++ LW +WLERN R F+    + ++ W+ ++   + W +   + F N +   +
Subjt:  AQAAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVI

Query:  LQNW
        +++W
Subjt:  LQNW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCCAAGCCGCCTGGTCTGGACTCTTCAATGTCTTCAATGTTAGCTTCTGCCTCCTGAAATCCATCGATGATTGCCTCCTGCAAACTCTTATGGGAGGGTGTTTCACGTA
CAGAGCTAAAAGTCTATGGAACTATACCACTGTGGCTACTCTTTGGAACTTATGGTTAGAACGAAATCAGAGGACGTTTAAGAATGAATGTCTTAATTGTGATAGCTTTT
GGAATGGTGTTCAACTTACAGCCTCTAGGTGGTGTTTTTCTTTGAACAATTCTTTTTGTAACTACACCCTCACAGTGATCCTCCAAAATTGG
mRNA sequenceShow/hide mRNA sequence
GCCCAAGCCGCCTGGTCTGGACTCTTCAATGTCTTCAATGTTAGCTTCTGCCTCCTGAAATCCATCGATGATTGCCTCCTGCAAACTCTTATGGGAGGGTGTTTCACGTA
CAGAGCTAAAAGTCTATGGAACTATACCACTGTGGCTACTCTTTGGAACTTATGGTTAGAACGAAATCAGAGGACGTTTAAGAATGAATGTCTTAATTGTGATAGCTTTT
GGAATGGTGTTCAACTTACAGCCTCTAGGTGGTGTTTTTCTTTGAACAATTCTTTTTGTAACTACACCCTCACAGTGATCCTCCAAAATTGG
Protein sequenceShow/hide protein sequence
AQAAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW