; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001837 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001837
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationscaffold30:313545..315033
RNA-Seq ExpressionMS001837
SyntenyMS001837
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]2.4e-8587.37Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASP+GPS HS NGVVNGDASSEST+HH D+S GG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]1.1e-8587.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]1.1e-98100Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG
        MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG

Query:  SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
Subjt:  SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]2.2e-8687.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLIDQLR+LVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]5.1e-8386.87Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+KPT++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS   TATS L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ A AYESGTSG  SPADQSEIDKLEQHL +LRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

TrEMBL top hitse value%identityAlignment
A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 305.3e-8687.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 305.3e-8687.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

A0A6J1C121 mediator of RNA polymerase II transcription subunit 305.5e-99100Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG
        MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTG

Query:  SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
Subjt:  SGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 301.1e-8687.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLIDQLR+LVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 301.1e-8687.88Show/hide
Query:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG
        ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGG
Subjt:  MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA---TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGG

Query:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLIDQLR+LVAD+STWQSPCSV
Subjt:  GTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 301.8e-4355.68Show/hide
Query:  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARV
        TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA +    NG      + +V+ DA++ + T+HH++++ GGG G  G   L+EA +
Subjt:  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARV

Query:  RYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        RY NSV +LRA+LAAIP+SQ AKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+ADISTWQSPCSV
Subjt:  RYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein1.3e-4455.68Show/hide
Query:  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARV
        TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA +    NG      + +V+ DA++ + T+HH++++ GGG G  G   L+EA +
Subjt:  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARV

Query:  RYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
        RY NSV +LRA+LAAIP+SQ AKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+ADISTWQSPCSV
Subjt:  RYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCT
CTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCA
CAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTT
CGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGA
CCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTG
CTGATATATCTACATGGCAAAGTCCTTGTTCAGTT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCT
CTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCA
CAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTT
CGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGA
CCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTG
CTGATATATCTACATGGCAAAGTCCTTGTTCAGTT
Protein sequenceShow/hide protein sequence
MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARV
RYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV