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MS001839 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001839
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold30:317707..317853
RNA-Seq ExpressionMS001839
SyntenyMS001839
Gene Ontology termsGO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0048583 - regulation of response to stimulus (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72120.1 hypothetical protein VITISV_031908 [Vitis vinifera]3.7e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
CAN82456.1 hypothetical protein VITISV_010028 [Vitis vinifera]9.7e-0757.14Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NKN WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
RVW30576.1 hypothetical protein CK203_086033 [Vitis vinifera]3.7e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
RVW31723.1 putative ribonuclease H protein [Vitis vinifera]3.7e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
RVW83382.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Vitis vinifera]3.7e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
TrEMBL top hitse value%identityAlignment
A0A438D8E9 Putative ribonuclease H protein1.8e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
A0A438F691 Uncharacterized protein1.8e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
A0A438G615 Uncharacterized protein1.8e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
A0A438HFZ0 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH61.8e-0654.76Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
A5AQB4 Uncharacterized protein4.7e-0757.14Show/hide
Query:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
        +G G K+ FW DLW  D  L  AFP +F LA NKN WVC AW
Subjt:  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGGGAGGGGTGACAAAATTAGCTTCTGGAATGATTTGTGGGCAATGGACTCTCCCTTAGCAAAGGCCTTTCCCAAAATTTTTGCCTTGGCCTCGAACAAAAATATTTG
GGTCTGCCAAGCTTGGTCCAATGCAACAAGTTCGTGG
mRNA sequenceShow/hide mRNA sequence
ATTGGGAGGGGTGACAAAATTAGCTTCTGGAATGATTTGTGGGCAATGGACTCTCCCTTAGCAAAGGCCTTTCCCAAAATTTTTGCCTTGGCCTCGAACAAAAATATTTG
GGTCTGCCAAGCTTGGTCCAATGCAACAAGTTCGTGG
Protein sequenceShow/hide protein sequence
IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAWSNATSSW