; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001846 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001846
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold30:356758..357108
RNA-Seq ExpressionMS001846
SyntenyMS001846
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273075.1 unnamed protein product [Prunus armeniaca]6.7e-0636.75Show/hide
Query:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL
        N  L G Q +P   LV R +     F +Y      S T +RS ++     +WRPP  N FKLN D A          GA++RDS+G LV A  ++ PS +
Subjt:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL

Query:  PPLLTEIWGILEGIKFA
          L TE++ +  GI FA
Subjt:  PPLLTEIWGILEGIKFA

CAB4273199.1 unnamed protein product [Prunus armeniaca]6.1e-0733.33Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPL
        N  L G Q +P  +  +   +Y ++++ + + +H   RS ++     +WRPP  N FKLN D A    P     GA++RDS G LV A  ++ PS +  L
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPL

Query:  LTEIWGILEGIKFA
         TE++ +  G+ FA
Subjt:  LTEIWGILEGIKFA

CAB4308602.1 unnamed protein product [Prunus armeniaca]1.5e-0535.9Show/hide
Query:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL
        N  L G Q +P   LV R +     F +Y  A       +RS ++     +WRPP  N FKLN D A          GA++RDS+G LV A  ++ PS +
Subjt:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL

Query:  PPLLTEIWGILEGIKFA
          L TE++ +  GI FA
Subjt:  PPLLTEIWGILEGIKFA

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.0e-1436.84Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT
        NS  HG  +S   +R  WI +YF  Y QA+     + + ++      +W PP +++ K+N+D ACR   + +G ++RD  G L+ A  +  P PL PL  
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT

Query:  EIWGILEGIKFAAA
        EI GILE +K AA+
Subjt:  EIWGILEGIKFAAA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-1946.49Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT
        NS +HGKQ+SP+  + EW+  + + + QA++ +++    +      Q WRP +  S KLNTD ACR   +S G ++RDS+  LVAAT I+ P PL PLL 
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT

Query:  EIWGILEGIKFAAA
        EI  ILEG+KFAAA
Subjt:  EIWGILEGIKFAAA

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047861.5e-1436.84Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT
        NS  HG  +S   +R  WI +YF  Y QA+     + + ++      +W PP +++ K+N+D ACR   + +G ++RD  G L+ A  +  P PL PL  
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT

Query:  EIWGILEGIKFAAA
        EI GILE +K AA+
Subjt:  EIWGILEGIKFAAA

A0A6J1DX30 uncharacterized protein LOC1110248745.2e-2046.49Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT
        NS +HGKQ+SP+  + EW+  + + + QA++ +++    +      Q WRP +  S KLNTD ACR   +S G ++RDS+  LVAAT I+ P PL PLL 
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLT

Query:  EIWGILEGIKFAAA
        EI  ILEG+KFAAA
Subjt:  EIWGILEGIKFAAA

A0A6J5UA97 RNase H domain-containing protein2.9e-0733.33Show/hide
Query:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPL
        N  L G Q +P  +  +   +Y ++++ + + +H   RS ++     +WRPP  N FKLN D A    P     GA++RDS G LV A  ++ PS +  L
Subjt:  NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPL

Query:  LTEIWGILEGIKFA
         TE++ +  G+ FA
Subjt:  LTEIWGILEGIKFA

A0A6J5UD52 Reverse transcriptase domain-containing protein3.3e-0636.75Show/hide
Query:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL
        N  L G Q +P   LV R +     F +Y      S T +RS ++     +WRPP  N FKLN D A          GA++RDS+G LV A  ++ PS +
Subjt:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL

Query:  PPLLTEIWGILEGIKFA
          L TE++ +  GI FA
Subjt:  PPLLTEIWGILEGIKFA

A0A6J5Y0D5 Uncharacterized protein7.2e-0635.9Show/hide
Query:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL
        N  L G Q +P   LV R +     F +Y  A       +RS ++     +WRPP  N FKLN D A          GA++RDS+G LV A  ++ PS +
Subjt:  NSFLHGKQISP---LVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVA--CRPNLSSIGAVLRDSNGFLVAATMIQHPSPL

Query:  PPLLTEIWGILEGIKFA
          L TE++ +  GI FA
Subjt:  PPLLTEIWGILEGIKFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAGATCCAATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACA
TACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTT
CCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAA
GGCATAAAATTCGCTGCAGCG
mRNA sequenceShow/hide mRNA sequence
TCAAGATCCAATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACA
TACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTT
CCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAA
GGCATAAAATTCGCTGCAGCG
Protein sequenceShow/hide protein sequence
SRSNSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILE
GIKFAAA