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MS001851 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001851
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDET1- and DDB1-associated protein 1
Genome locationscaffold30:386626..387813
RNA-Seq ExpressionMS001851
SyntenyMS001851
Gene Ontology termsGO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
InterPro domainsIPR033575 - DET1- and DDB1-associated protein 1
IPR036361 - SAP domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057775.1 apoptotic chromatin condensation inducer in the nucleus [Cucumis melo var. makuwa]1.3e-3883.93Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYRNQIC
        KKASI YRNQ C
Subjt:  KKASICYRNQIC

KAG7021398.1 hypothetical protein SDJN02_15123 [Cucurbita argyrosperma subsp. argyrosperma]6.1e-3684.55Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVAAA+SSRKRAGEKISD RAKR +AQV S KGASNSE PSKD  NLTVERLRALLKARGLS KG
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYRNQ
        KKASI Y NQ
Subjt:  KKASICYRNQ

XP_008464442.1 PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo]3.3e-3480.56Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

XP_022135549.1 uncharacterized protein LOC111007476 [Momordica charantia]8.2e-4190.74Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSK LYNLTVERLRALLKARGLSPKG
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

XP_038878488.1 uncharacterized protein LOC120070711 [Benincasa hispida]7.4e-3480.56Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKN+SSKDGKG AAA+SSRKRAGEKISDSRAKRA AQVCS KGASN+E PSKDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

TrEMBL top hitse value%identityAlignment
A0A0A0LNX7 DET1- and DDB1-associated protein 11.0e-3378.7Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA  +SSRKRAGEKISDSRAK+A AQVCS+KGASN+E P+KDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

A0A1S3CLX1 DET1- and DDB1-associated protein 11.6e-3480.56Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

A0A5A7UW19 DET1- and DDB1-associated protein 16.3e-3983.93Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +G
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYRNQIC
        KKASI YRNQ C
Subjt:  KKASICYRNQIC

A0A6J1C1R1 DET1- and DDB1-associated protein 14.0e-4190.74Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSK LYNLTVERLRALLKARGLSPKG
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

A0A6J1KMN1 DET1- and DDB1-associated protein 12.3e-3381.48Show/hide
Query:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG
        LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVAAA+SSRKRAGEKISD RAKR +AQV S KGASNSE PSKD  NLTVERLRALLKARGLS KG
Subjt:  LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKG

Query:  KKASICYR
        KK  +  R
Subjt:  KKASICYR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63460.1 SAP domain-containing protein2.8e-1547.75Show/hide
Query:  HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLS
        H    PE Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+    A   S +  S+S    +D  +LTVE+LRA+LK +GL 
Subjt:  HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLS

Query:  PKGKKASICYR
         KG+K  +  R
Subjt:  PKGKKASICYR

AT5G63460.2 SAP domain-containing protein6.3e-1548.65Show/hide
Query:  HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLS
        H    PE Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+    A   S +G S+S    +D  +LTVE+LRA+LK +GL 
Subjt:  HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLS

Query:  PKGKKASICYR
         KG+K  +  R
Subjt:  PKGKKASICYR

AT5G63460.4 SAP domain-containing protein9.1e-1448.54Show/hide
Query:  QDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASI
        Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+    A   S +  S+S    +D  +LTVE+LRA+LK +GL  KG+K  +
Subjt:  QDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASI

Query:  CYR
          R
Subjt:  CYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCACTCCATTTTGTACCCAGAGGATCAAGACATAAAGACAAATCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGT
AGCTGCAGCTGACTCCTCCCGGAAGAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCGAAGAGGGCCAGCGCACAAGTATGTTCAACCAAAGGAGCATCAAACAGTGAAG
TACCGAGTAAGGATCTCTATAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAGAGGCCTTTCGCCCAAAGGAAAGAAGGCAAGTATATGTTATCGTAATCAG
ATCTGTAGTAGC
mRNA sequenceShow/hide mRNA sequence
CTTCACTCCATTTTGTACCCAGAGGATCAAGACATAAAGACAAATCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGT
AGCTGCAGCTGACTCCTCCCGGAAGAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCGAAGAGGGCCAGCGCACAAGTATGTTCAACCAAAGGAGCATCAAACAGTGAAG
TACCGAGTAAGGATCTCTATAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAGAGGCCTTTCGCCCAAAGGAAAGAAGGCAAGTATATGTTATCGTAATCAG
ATCTGTAGTAGC
Protein sequenceShow/hide protein sequence
LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYRNQ
ICSS