CuGenDBv2

Gene ID	MS001872
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	C2H2-type domain-containing protein
Genome location	scaffold30:549084..552213
RNA-Seq Expression	MS001872
Synteny	MS001872
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ98477.1 uncharacterized protein E5676_scaffold350G00790 [Cucumis melo var. makuwa]

5.5e-124

89.83

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Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+E ENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK+KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

XP_004138066.1 uncharacterized protein LOC101218367 isoform X2 [Cucumis sativus]

8.5e-125

90.25

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Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+EKENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

XP_008464477.1 PREDICTED: uncharacterized protein LOC103502344 [Cucumis melo]

5.5e-124

89.83

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+E ENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK+KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

XP_022135236.1 uncharacterized protein LOC111007249 [Momordica charantia]

9.0e-135

99.15

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCDMKM+MKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

XP_023515783.1 uncharacterized protein LOC111779843 [Cucurbita pepo subsp. pepo]

1.4e-122

88.14

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Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ +EH +EVHCSRERS+TAWNI+EEHLLPF+EKENYQVST+CRLHP+NDLFRDQEQHKIH DINHWQCGYCRKSFRAEKFLDKHFDNRH++LLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLAD+CFPINEGPSASRLH+LFLHQFCGAHSCT K KPFS+GAERQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VL+RISKAGRKTKPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LU52 C2H2-type domain-containing protein

4.1e-125

90.25

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+EKENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

A0A1S3CLJ0 uncharacterized protein LOC103502344

2.7e-124

89.83

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Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+E ENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK+KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

A0A5D3BH78 C2H2-type domain-containing protein

2.7e-124

89.83

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ EEHVDEVHCSRERS+TAWNIIEEHLLPF+E ENY+VST+CRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRH NLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLADSCFPINEGPSA+RLH+LFLHQFCGAHSCTGK KPFS+GA RQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VLKRISKAGRK+KPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

A0A6J1C036 uncharacterized protein LOC111007249

4.4e-135

99.15

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHP+NDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCDMKM+MKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

A0A6J1E7A2 uncharacterized protein LOC111430069

1.9e-122

87.71

Show/hide

Query:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS
        RPL++ +EH +EVHCSRERS+TAWNI+EEHLLPF+EKENYQVST+CRLHP+NDLFRDQEQHKIH DINHWQCGYCRKSFRAEKFLDKHFDNRH++LLNVS
Subjt:  RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVS

Query:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM
        HGKCLADLCGALHCD+KM++KSRKSKC PAAAARNKHLCESLAD+CFPINEGPSASRLH+LFLHQFCGAHSCT K KPFS+GAERQPGIFYMASSILILM
Subjt:  HGKCLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILM

Query:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL
        LLP+FYVIVYLHRRES+N I+VL+RISK+GRKTKPL
Subjt:  LLPLFYVIVYLHRRESKNEIQVLKRISKAGRKTKPL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G40710.1 zinc finger (C2H2 type) family protein

2.3e-80

57.76

Show/hide

Query:  KEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVSHGK
        K+ E+   E+HCSRERS+ AW II+E+L+P++EKE YQ+ + CR+H  ND++R+QE+HK+  DIN W+CG+C+K+F  EK+LDKHFD+RH+NLLN SHGK
Subjt:  KEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVSHGK

Query:  CLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILMLLP
        CL+DLCGALHCD+ ++    KSKC+PAAAA+N+HLCESLA+SCFP+N+G SA+RLHD FL QFC AH+C+G  KP S+  +++  I Y+  SI++L++L 
Subjt:  CLADLCGALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILMLLP

Query:  LFYVIVYLHRRESKNEIQVLKRISKAGRKTKP
        L+Y  VYL RR  K   Q LKRI   G K KP
Subjt:  LFYVIVYLHRRESKNEIQVLKRISKAGRKTKP

AT5G63280.1 C2H2-like zinc finger protein

1.0e-88

62.5

Show/hide

Query:  EVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVSHGKCLADLCGA
        E+HCSRERS+ AW II+++L PF+E+E Y++   CRLHP NDL+RDQE HK+H+D+  W+CGYC+KSF  EKFLDKHF  RH+NLLN +  KCLADLCGA
Subjt:  EVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVSHGKCLADLCGA

Query:  LHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILMLLPLFYVIVYL
        LHCD  +  K  KSKC+P A A+N+HLCES+A+SCFP+++GPSASRLH+ FL QFC AH+CTG  KPF +G +++ G+FY+A SIL LMLLPLFY++V+L
Subjt:  LHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILMLLPLFYVIVYL

Query:  HRRESKNEIQVLKRISKAGRKTKP
        H+RE ++  Q L+RI K+G+KTKP
Subjt:  HRRESKNEIQVLKRISKAGRKTKP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AGACCTCTTAAGGAAGCTGAAGAGCATGTTGATGAAGTACACTGTTCCAGAGAAAGAAGTAAGACAGCCTGGAATATTATTGAGGAGCATTTGCTGCCGTTTTTAGAGAA
GGAAAATTATCAGGTTTCAACTGAGTGTAGGCTTCATCCACACAATGATCTGTTCAGAGATCAGGAGCAGCACAAGATTCATCTGGATATAAATCATTGGCAGTGTGGAT
ACTGTCGGAAGAGCTTTCGTGCCGAAAAGTTTCTTGATAAGCATTTTGACAACAGACATCACAATCTTCTGAATGTCAGCCACGGCAAGTGCTTAGCTGATTTATGTGGG
GCATTACATTGTGACATGAAGATGGAAATGAAGTCACGTAAATCTAAATGCAGTCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGAGTCTTGCTGATAGCTGTTT
TCCTATTAATGAGGGACCATCAGCAAGCCGTCTCCATGATTTGTTTCTTCACCAATTTTGTGGAGCTCATTCTTGCACTGGAAAACTAAAGCCATTTTCTAAAGGAGCGG
AGAGGCAACCAGGAATCTTTTACATGGCATCTTCAATACTGATTTTGATGTTGCTACCTCTTTTCTATGTCATTGTGTATTTACACCGCAGAGAATCGAAGAATGAGATC
CAGGTGCTTAAACGAATCTCAAAAGCTGGACGTAAAACCAAACCCTTA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

RPLKEAEEHVDEVHCSRERSKTAWNIIEEHLLPFLEKENYQVSTECRLHPHNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHHNLLNVSHGKCLADLCG
ALHCDMKMEMKSRKSKCSPAAAARNKHLCESLADSCFPINEGPSASRLHDLFLHQFCGAHSCTGKLKPFSKGAERQPGIFYMASSILILMLLPLFYVIVYLHRRESKNEI
QVLKRISKAGRKTKPL

MS001872 (gene) of Bitter gourd (TR) v1 genome