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MS001887 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001887
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionocticosapeptide/Phox/Bem1p (PB1) domain-containing protein
Genome locationscaffold30:682412..682758
RNA-Seq ExpressionMS001887
SyntenyMS001887
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023097.1 hypothetical protein SDJN02_14121 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-3692.94Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPR+ DGKLRYVGGLTRVLAVDRSVS+SELMVKLGEFCGS+VTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

XP_004138082.1 uncharacterized protein LOC101222072 [Cucumis sativus]9.1e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RSVSFSELMVKLGEFCGSSVTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

XP_008464503.1 PREDICTED: uncharacterized protein LOC103502365 [Cucumis melo]9.1e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RSVSFSELMVKLGEFCGSSVTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

XP_023515548.1 uncharacterized protein LOC111779672 [Cucurbita pepo subsp. pepo]4.5e-3692.94Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPR+ DGKLRYVGGLTRVLAVDRSVS+SELMVKLGEFCGS+VTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

XP_038878416.1 uncharacterized protein LOC120070656 [Benincasa hispida]2.4e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RS+SFSELMVKLGEFCGSSVTLKCQLP GDLETLISVTSDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

TrEMBL top hitse value%identityAlignment
A0A0A0LNT0 PB1 domain-containing protein4.4e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RSVSFSELMVKLGEFCGSSVTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

A0A1S3CLS3 uncharacterized protein LOC1035023654.4e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RSVSFSELMVKLGEFCGSSVTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

A0A5D3BH99 Octicosapeptide/Phox/Bem1p family protein4.4e-3795.29Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPRQ DGKLRYVGGLTRVLAV+RSVSFSELMVKLGEFCGSSVTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

A0A6J1HMN8 uncharacterized protein LOC1114649832.2e-3692.94Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPR+ DGKLRYVGGLTRVLAVDRSVS+SELMVKLGEFCGS+VTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

A0A6J1JGA5 uncharacterized protein LOC1114848562.2e-3692.94Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGGKILPR+ DGKLRYVGGLTRVLAVDRSVS+SELMVKLGEFCGS+VTLKCQLP GDLETLISV SDEDLANIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26510.1 Octicosapeptide/Phox/Bem1p family protein1.3e-2867.42Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD
        +KFLCSYGGKILPR  DGKLRY GG TRVLAV RSVSFSEL  K+ E CG      +VT++CQLP  DL+ L+S+TSDEDL N++EEYD
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD

AT3G26510.2 Octicosapeptide/Phox/Bem1p family protein1.3e-2867.42Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD
        +KFLCSYGGKILPR  DGKLRY GG TRVLAV RSVSFSEL  K+ E CG      +VT++CQLP  DL+ L+S+TSDEDL N++EEYD
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD

AT3G26510.3 Octicosapeptide/Phox/Bem1p family protein1.3e-2867.42Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD
        +KFLCSYGGKILPR  DGKLRY GG TRVLAV RSVSFSEL  K+ E CG      +VT++CQLP  DL+ L+S+TSDEDL N++EEYD
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGS-----SVTLKCQLPDGDLETLISVTSDEDLANIVEEYD

AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein1.2e-3481.18Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGG+ILPR IDGKLRYVGG TRVL+V  S+SF+EL +KL EFCG SV LKCQLP+GDLETLISV SDEDL NIVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR

AT5G63130.1 Octicosapeptide/Phox/Bem1p family protein3.5e-3481.18Show/hide
Query:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR
        LKFLCSYGG+ILPR  DGKLRYVGG TRVL+VDRS+SFSELM KL EFCG SV L+CQLP+GDLETLISV S+E+LA IVEEYDR
Subjt:  LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAAGTTTCTCTGTAGCTATGGCGGCAAGATTCTTCCCCGTCAGATCGACGGCAAACTCCGTTACGTTGGTGGTCTTACCAGAGTCCTCGCCGTCGATCGTTCCGTTTC
GTTTTCTGAACTAATGGTGAAGCTTGGAGAATTCTGTGGCTCTTCCGTTACGTTGAAGTGCCAATTGCCGGACGGAGACTTGGAAACTTTGATTTCCGTTACATCCGACG
AAGATTTGGCTAACATCGTCGAGGAATACGACCGT
mRNA sequenceShow/hide mRNA sequence
CTAAAGTTTCTCTGTAGCTATGGCGGCAAGATTCTTCCCCGTCAGATCGACGGCAAACTCCGTTACGTTGGTGGTCTTACCAGAGTCCTCGCCGTCGATCGTTCCGTTTC
GTTTTCTGAACTAATGGTGAAGCTTGGAGAATTCTGTGGCTCTTCCGTTACGTTGAAGTGCCAATTGCCGGACGGAGACTTGGAAACTTTGATTTCCGTTACATCCGACG
AAGATTTGGCTAACATCGTCGAGGAATACGACCGT
Protein sequenceShow/hide protein sequence
LKFLCSYGGKILPRQIDGKLRYVGGLTRVLAVDRSVSFSELMVKLGEFCGSSVTLKCQLPDGDLETLISVTSDEDLANIVEEYDR