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MS001927 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001927
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncyclic nucleotide-gated channel 16
Genome locationscaffold30:1075736..1076178
RNA-Seq ExpressionMS001927
SyntenyMS001927
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005216 - ion channel activity (molecular function)
InterPro domainsIPR005821 - Ion transport domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589454.1 putative cyclic nucleotide-gated ion channel 16, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

XP_022146734.1 probable cyclic nucleotide-gated ion channel 16 isoform X1 [Momordica charantia]1.8e-4883.47Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        +PQ VIWFVIPALKNPTA H NHTLALIVLIQYAP   + F     INK+TGAI KTAWA AAYNLLLYLLASHVIGAAWYVASIQRQDECWK++CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        NATRSPSC PLFLDCDSLEQP
Subjt:  NATRSPSC-PLFLDCDSLEQP

XP_022965027.1 probable cyclic nucleotide-gated ion channel 16 [Cucurbita moschata]3.0e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

XP_022988346.1 probable cyclic nucleotide-gated ion channel 16 [Cucurbita maxima]3.0e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

XP_023515994.1 probable cyclic nucleotide-gated ion channel 16 isoform X1 [Cucurbita pepo subsp. pepo]3.0e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

TrEMBL top hitse value%identityAlignment
A0A0A0LS40 Cyclic nucleotide-binding domain-containing protein2.4e-4678.51Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNP+A H NHTLALIVLIQYAP   + F     INK+TGAI KTAWA AAYNLLLYLLASHVIGAAWYVASIQRQDECWK++CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P+FLDC+SL++P
Subjt:  NATRSPSC-PLFLDCDSLEQP

A0A1S3BUU6 probable cyclic nucleotide-gated ion channel 162.4e-4678.51Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNP+A H NHTLALIVLIQYAP   + F     INK+TGAI KTAWA AAYNLLLYLLASHVIGAAWYVASIQRQDECWK++CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P+FLDC+SL++P
Subjt:  NATRSPSC-PLFLDCDSLEQP

A0A6J1CYX6 probable cyclic nucleotide-gated ion channel 16 isoform X19.0e-4983.47Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        +PQ VIWFVIPALKNPTA H NHTLALIVLIQYAP   + F     INK+TGAI KTAWA AAYNLLLYLLASHVIGAAWYVASIQRQDECWK++CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        NATRSPSC PLFLDCDSLEQP
Subjt:  NATRSPSC-PLFLDCDSLEQP

A0A6J1HJ85 probable cyclic nucleotide-gated ion channel 161.4e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

A0A6J1JGZ0 probable cyclic nucleotide-gated ion channel 161.4e-4679.34Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFV+PALKNPTA H NHTLALIVLIQYAP   + F     INK+TG+I KTAWA AAYNLLLYLLASH+IGAAWYVASIQRQDECWKI+CRKEM
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYF----LINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        N T SPSC P FLDCDSL +P
Subjt:  NATRSPSC-PLFLDCDSLEQP

SwissProt top hitse value%identityAlignment
G7JND3 Protein CNGC15b7.4e-2446.22Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQ++IW VIP L   T  +  + L  I++IQY P   L F ++    K+TG + +TAWA AAYNL+LY+LASHV+GA WY+ SI+RQ+ CWK  C+ E 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPL-FLDCDSLE
              SC   F DC+ ++
Subjt:  NATRSPSCPL-FLDCDSLE

Q8L7Z0 Cyclic nucleotide-gated ion channel 176.4e-2853.39Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFVI   K+    HNN+ +ALIVL+QY P + L   ++    K+TG + KTAWA AAYNLLLY+LASHV+GAAWY+ S+ R   CWK  C  E 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPL-FLDCDSL
              +C L +LDCDS+
Subjt:  NATRSPSCPL-FLDCDSL

Q9LEQ3 Cyclic nucleotide-gated ion channel 183.9e-3361.98Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQ+VIW VIPA  N TA H N TLALIVL+QY P   + F +N    K+TG I KTAWA AAYNLLLY+LASHV+GA WY++SI RQ  CW   C+K+ 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        NA R   C P FLDC SLEQP
Subjt:  NATRSPSC-PLFLDCDSLEQP

Q9SJA4 Probable cyclic nucleotide-gated ion channel 141.3e-2546.77Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIV WF++P++++  + H  + L LIVL+QY P   L F ++    K+TG +  TAWA AAYNLL Y+LASH++G+AWY+ SI+RQ  CWK +C KE 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPL-----FLDCDSLEQ
              S PL     F DC +L +
Subjt:  NATRSPSCPL-----FLDCDSLEQ

Q9SU64 Probable cyclic nucleotide-gated ion channel 161.1e-3563.11Show/hide
Query:  LPQIVIWFVIP-ALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKE
        LPQI+IWFVIP A +   A H NHTL+LIVLIQY P +L+   +N    K+TG   KTAW+ AAYNL+LYLL SHV+G+ WYV SIQRQ ECW+ +C KE
Subjt:  LPQIVIWFVIP-ALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKE

Query:  MNATRSPSCP-LFLDCDSLEQP
        MNAT SPSC  LFLDC SL  P
Subjt:  MNATRSPSCP-LFLDCDSLEQP

Arabidopsis top hitse value%identityAlignment
AT2G24610.1 cyclic nucleotide-gated channel 149.5e-2746.77Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIV WF++P++++  + H  + L LIVL+QY P   L F ++    K+TG +  TAWA AAYNLL Y+LASH++G+AWY+ SI+RQ  CWK +C KE 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPL-----FLDCDSLEQ
              S PL     F DC +L +
Subjt:  NATRSPSCPL-----FLDCDSLEQ

AT2G28260.1 cyclic nucleotide-gated channel 152.2e-2340.83Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQ++IW +IP L+     +  + L  I++ QY P   L F ++    K+TG + +TAWA AAYNL+LY+LASHV+GA WY+ +++RQ+ CW+  C  E 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPLFLDCDSLEQP
           +      F +C  LE P
Subjt:  NATRSPSCPLFLDCDSLEQP

AT3G48010.1 cyclic nucleotide-gated channel 167.8e-3763.11Show/hide
Query:  LPQIVIWFVIP-ALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKE
        LPQI+IWFVIP A +   A H NHTL+LIVLIQY P +L+   +N    K+TG   KTAW+ AAYNL+LYLL SHV+G+ WYV SIQRQ ECW+ +C KE
Subjt:  LPQIVIWFVIP-ALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKE

Query:  MNATRSPSCP-LFLDCDSLEQP
        MNAT SPSC  LFLDC SL  P
Subjt:  MNATRSPSCP-LFLDCDSLEQP

AT4G30360.1 cyclic nucleotide-gated channel 174.6e-2953.39Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQIVIWFVI   K+    HNN+ +ALIVL+QY P + L   ++    K+TG + KTAWA AAYNLLLY+LASHV+GAAWY+ S+ R   CWK  C  E 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSCPL-FLDCDSL
              +C L +LDCDS+
Subjt:  NATRSPSCPL-FLDCDSL

AT5G14870.1 cyclic nucleotide-gated channel 182.8e-3461.98Show/hide
Query:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM
        LPQ+VIW VIPA  N TA H N TLALIVL+QY P   + F +N    K+TG I KTAWA AAYNLLLY+LASHV+GA WY++SI RQ  CW   C+K+ 
Subjt:  LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLIN----KSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEM

Query:  NATRSPSC-PLFLDCDSLEQP
        NA R   C P FLDC SLEQP
Subjt:  NATRSPSC-PLFLDCDSLEQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACCGCAGATTGTGATTTGGTTCGTAATTCCAGCACTAAAAAACCCAACAGCAGGTCATAACAACCACACTCTTGCTCTGATTGTGCTAATTCAGTATGCCCCCGCCTA
TTTGTTATATTTCCTCATCAATAAGTCCACTGGAGCAATTGTCAAAACTGCTTGGGCTAGTGCTGCTTATAATCTCCTCCTCTATTTGCTTGCTAGCCATGTTATAGGAG
CTGCATGGTATGTGGCATCAATTCAGCGCCAGGATGAGTGTTGGAAGATCGACTGCAGAAAGGAGATGAATGCCACTCGTTCCCCTTCTTGCCCTCTTTTTCTCGACTGT
GATAGTTTGGAGCAGCCC
mRNA sequenceShow/hide mRNA sequence
CTACCGCAGATTGTGATTTGGTTCGTAATTCCAGCACTAAAAAACCCAACAGCAGGTCATAACAACCACACTCTTGCTCTGATTGTGCTAATTCAGTATGCCCCCGCCTA
TTTGTTATATTTCCTCATCAATAAGTCCACTGGAGCAATTGTCAAAACTGCTTGGGCTAGTGCTGCTTATAATCTCCTCCTCTATTTGCTTGCTAGCCATGTTATAGGAG
CTGCATGGTATGTGGCATCAATTCAGCGCCAGGATGAGTGTTGGAAGATCGACTGCAGAAAGGAGATGAATGCCACTCGTTCCCCTTCTTGCCCTCTTTTTCTCGACTGT
GATAGTTTGGAGCAGCCC
Protein sequenceShow/hide protein sequence
LPQIVIWFVIPALKNPTAGHNNHTLALIVLIQYAPAYLLYFLINKSTGAIVKTAWASAAYNLLLYLLASHVIGAAWYVASIQRQDECWKIDCRKEMNATRSPSCPLFLDC
DSLEQP