; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001935 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001935
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationscaffold30:1133360..1135093
RNA-Seq ExpressionMS001935
SyntenyMS001935
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR010729 - Ribosomal protein L47, mitochondrial
IPR036049 - Ribosomal protein L29/L35 superfamily
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]5.0e-6492.31Show/hide
Query:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPERIPKVRKS+CRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_022135437.1 39S ribosomal protein L47, mitochondrial [Momordica charantia]2.1e-7099.3Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAIEEPDPRRSAEMKRMINAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_022921695.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata]1.5e-6390.85Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF 
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_022988417.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima]2.7e-6592.96Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRV GR  LAAARSETSSAAAAAST  TGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF 
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]1.3e-6493.01Show/hide
Query:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSSA  AAA+T R GYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRMINAL
Subjt:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein2.4e-6492.31Show/hide
Query:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPERIPKVRKS+CRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A1S3BWK4 39S ribosomal protein L47, mitochondrial9.2e-6492.31Show/hide
Query:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF

Query:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
         NPERI KVRKS+CRIK VLTERAI+EPDPRRSAEMKRMINAL
Subjt:  LNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1C2P6 39S ribosomal protein L47, mitochondrial1.0e-7099.3Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAIEEPDPRRSAEMKRMINAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1E238 39S ribosomal protein L47, mitochondrial7.1e-6490.85Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF 
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial1.3e-6592.96Show/hide
Query:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL
        MFLTRV GR  LAAARSETSSAAAAAST  TGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF 
Subjt:  MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFL

Query:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRM+NAL
Subjt:  NPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial1.1e-0835.71Show/hide
Query:  RSETSSAAAAASTVRTGY----------------NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR
        RS  +SA  AA  +  G+                +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L 
Subjt:  RSETSSAAAAASTVRTGY----------------NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR

Query:  F--LNPERIPKVRKSLCRIKQVLTER
            + ER+  V K++  IK VL ER
Subjt:  F--LNPERIPKVRKSLCRIKQVLTER

Q08DT6 39S ribosomal protein L47, mitochondrial6.1e-1247.13Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L   +PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER

Q2H080 54S ribosomal protein L4, mitochondrial6.3e-0940.38Show/hide
Query:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNP---ERIPKVRKSLCRIKQVLTERAIEEPDPR
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +   L F      ER   VR+++  IK VLTER     D  
Subjt:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNP---ERIPKVRKSLCRIKQVLTERAIEEPDPR

Query:  RSAE
        + AE
Subjt:  RSAE

Q8K2Y7 39S ribosomal protein L47, mitochondrial3.5e-1247.13Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L   +PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER

Q9HD33 39S ribosomal protein L47, mitochondrial2.3e-1145.98Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L   +PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTER

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein8.8e-5980.56Show/hide
Query:  MFLTRVFGRTLLAA--ARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR
        MFLTR  GR  LAA  ARSE+++AAAAAST+RT  NPLEEFFE DRS D+DKPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTLLAA--ARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLR

Query:  FLNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL
        F NPERIPKVR+S+CRIK VLTERAIEEPD RRSAEMKRM+N +
Subjt:  FLNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGA
GGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGC
TATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAG
TCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGA
GGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGC
TATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAG
TCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG
Protein sequenceShow/hide protein sequence
MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRK
SLCRIKQVLTERAIEEPDPRRSAEMKRMINAL