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MS001939 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001939
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsuccinate dehydrogenase subunit 7B, mitochondrial-like
Genome locationscaffold30:1166071..1168690
RNA-Seq ExpressionMS001939
SyntenyMS001939
Gene Ontology termsGO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component)
GO:0043495 - protein membrane anchor (molecular function)
InterPro domainsIPR034573 - Succinate dehydrogenase subunit 7, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587488.1 Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4291.92Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+T LAS FRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYVKATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

XP_022135509.1 succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia]2.5e-46100Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

XP_022933942.1 succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata]1.4e-4190.91Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+T LAS FRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYVKATMREEARQA TASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

XP_022969157.1 succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima]1.2e-4392.93Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+TTLASHFRSQSQADPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYV+ATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

XP_023529214.1 succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo]2.0e-4392.93Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+TT ASHFRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYVKATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

TrEMBL top hitse value%identityAlignment
A0A6J1C1M2 succinate dehydrogenase subunit 7B, mitochondrial-like1.2e-46100Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

A0A6J1E5D6 succinate dehydrogenase subunit 7B, mitochondrial-like2.9e-4086.87Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF L +T+LASHFRSQSQ DPSS SRRGFH+EPGTREKALLAEDPSLRRFRSHKKGV+RIK++GD+LTIVVVAGCCYEIYVKATMREEARQAK AS S
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

A0A6J1F188 succinate dehydrogenase subunit 7B, mitochondrial-like7.0e-4290.91Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+T LAS FRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYVKATMREEARQA TASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

A0A6J1HVK4 succinate dehydrogenase subunit 7A, mitochondrial-like5.7e-4492.93Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF LN+TTLASHFRSQSQADPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYV+ATMREEARQAKTASGS
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

A0A6J1JM91 succinate dehydrogenase subunit 7A, mitochondrial-like6.6e-4087.88Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS
        MAF L +T LASHFRSQSQ DPSS SRRGFHVEPG REKALLAEDPSLRRFRSHKKGVSRIK++GD+LTIVVVAGCCYEIYVKATMREEARQAK AS S
Subjt:  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS

SwissProt top hitse value%identityAlignment
Q3E870 Succinate dehydrogenase subunit 7B, mitochondrial5.9e-3064Show/hide
Query:  MAFFLNRTTLASHFR---SQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS
        MAF LN  +++SH R   SQ   D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V ++KR+GD+LT+VVVAGCCYEIYVKA M++EA  A  +S
Subjt:  MAFFLNRTTLASHFR---SQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS

Q6H611 Succinate dehydrogenase subunit 7, mitochondrial2.8e-1146.91Show/hide
Query:  TTLASHFRSQSQADPS----SLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKA
        + L S  RS     P+       RRGFHVE G REKALL ED +L+RF+S+K  V ++ ++G+ILT VV+  C YEI   A
Subjt:  TTLASHFRSQSQADPS----SLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKA

Q9C5E8 Succinate dehydrogenase subunit 7A, mitochondrial4.7e-2768.42Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQA
        MAF LN T+++SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV R+KR+GD+LT+VVVAGCCYEIY +  MR+EA+ A
Subjt:  MAFFLNRTTLASHFRSQSQADPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQA

Arabidopsis top hitse value%identityAlignment
AT3G47833.1 unknown protein3.3e-2868.42Show/hide
Query:  MAFFLNRTTLASHFRSQSQADPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQA
        MAF LN T+++SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV R+KR+GD+LT+VVVAGCCYEIY +  MR+EA+ A
Subjt:  MAFFLNRTTLASHFRSQSQADPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQA

AT5G62575.1 unknown protein3.2e-3164.65Show/hide
Query:  MAFFLNRTTLASHFRSQSQ--ADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS
        MAF LN  +++SH RS S    D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V ++KR+GD+LT+VVVAGCCYEIYVKA M++EA  A  +S
Subjt:  MAFFLNRTTLASHFRSQSQ--ADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS

AT5G62575.2 unknown protein4.2e-3164Show/hide
Query:  MAFFLNRTTLASHFR---SQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS
        MAF LN  +++SH R   SQ   D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V ++KR+GD+LT+VVVAGCCYEIYVKA M++EA  A  +S
Subjt:  MAFFLNRTTLASHFR---SQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTTTTCCTCAACAGAACCACTCTCGCATCTCATTTCCGATCTCAATCCCAGGCGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCG
TGAGAAGGCTTTATTAGCTGAGGACCCTTCTCTTAGGCGGTTCAGATCACACAAGAAGGGTGTCTCTCGAATCAAAAGAATGGGAGACATTCTAACAATTGTCGTCGTTG
CAGGCTGTTGCTATGAAATCTACGTGAAGGCAACCATGCGAGAAGAAGCTCGACAGGCAAAGACCGCCAGCGGAAGTGCA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTTTTCCTCAACAGAACCACTCTCGCATCTCATTTCCGATCTCAATCCCAGGCGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCG
TGAGAAGGCTTTATTAGCTGAGGACCCTTCTCTTAGGCGGTTCAGATCACACAAGAAGGGTGTCTCTCGAATCAAAAGAATGGGAGACATTCTAACAATTGTCGTCGTTG
CAGGCTGTTGCTATGAAATCTACGTGAAGGCAACCATGCGAGAAGAAGCTCGACAGGCAAAGACCGCCAGCGGAAGTGCA
Protein sequenceShow/hide protein sequence
MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGSA