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MS001971 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001971
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold30:1378700..1379020
RNA-Seq ExpressionMS001971
SyntenyMS001971
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2597616.1 hypothetical protein D8674_000536 [Pyrus ussuriensis x Pyrus communis]3.6e-0632.35Show/hide
Query:  LTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHLV
        L F+K   +  S C                  S W+ P +G++K+NVD A  E+L   E+GVV R E G  +AA ++  E    PL++E+ A+ EG  L 
Subjt:  LTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHLV

Query:  MR
        ++
Subjt:  MR

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.1e-1572.88Show/hide
Query:  GWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL
        GW+KINVD ACK+  FRT IG+V R+E+GQI+AA SRR+EAYHDPLM ESLALLEG  L
Subjt:  GWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]4.5e-1749.5Show/hide
Query:  KCEWILTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLE
        + +WILT+V+DF+       G         S+D    + WSPP  GW+KINVDAACK+  FRT IG+V R+E+GQI+AA S      HDPLM ESLAL +
Subjt:  KCEWILTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLE

Query:  G
        G
Subjt:  G

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.3e-1143.53Show/hide
Query:  HGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL
        H     + P  +     ++ W+PPS  WVKINVD ACK +  RT IGVV ++++G+II A+ R+++ +++PL VE+LA+LEG  L
Subjt:  HGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL

XP_042939410.1 uncharacterized protein LOC122274438 [Carya illinoinensis]2.5e-0747.62Show/hide
Query:  VWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEG
        +W PP  G +K+NVD A     FR+ IGVV RD+RGQ++ A S+  EA  DP+ +E +A+L G
Subjt:  VWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEG

TrEMBL top hitse value%identityAlignment
A0A5N5F3P3 RNase H domain-containing protein1.7e-0632.35Show/hide
Query:  LTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHLV
        L F+K   +  S C                  S W+ P +G++K+NVD A  E+L   E+GVV R E G  +AA ++  E    PL++E+ A+ EG  L 
Subjt:  LTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHLV

Query:  MR
        ++
Subjt:  MR

A0A6J1CNR4 uncharacterized protein LOC1110129505.4e-1672.88Show/hide
Query:  GWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL
        GW+KINVD ACK+  FRT IG+V R+E+GQI+AA SRR+EAYHDPLM ESLALLEG  L
Subjt:  GWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL

A0A6J1CTE3 uncharacterized protein LOC1110145782.2e-1749.5Show/hide
Query:  KCEWILTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLE
        + +WILT+V+DF+       G         S+D    + WSPP  GW+KINVDAACK+  FRT IG+V R+E+GQI+AA S      HDPLM ESLAL +
Subjt:  KCEWILTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLE

Query:  G
        G
Subjt:  G

A0A6J1DJL6 uncharacterized protein LOC1110217116.2e-1243.53Show/hide
Query:  HGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL
        H     + P  +     ++ W+PPS  WVKINVD ACK +  RT IGVV ++++G+II A+ R+++ +++PL VE+LA+LEG  L
Subjt:  HGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHL

A0A6P9EIJ2 uncharacterized protein LOC1183488833.9e-0643.08Show/hide
Query:  LSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEG
        +S W PP  G +K+NVD A      + ++G++ARD  G+++ AVS++ EA  +PL +E LALL G
Subjt:  LSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATGCGAATGGATTCTGACATTTGTGAAGGATTTCAAGGAAAGTAGCAGTCTTTGCCATGGATCGATTTCCACTTATTCGCCTCAAGTCAGCTCTGATAGCGACTCCCT
GTCTGTTTGGTCTCCTCCCTCAATTGGGTGGGTGAAGATAAATGTGGATGCTGCATGTAAGGAAACTTTGTTTAGAACTGAAATTGGTGTTGTTGCCAGAGATGAAAGGG
GTCAAATTATTGCGGCTGTTTCTCGAAGGGTAGAAGCTTACCACGATCCATTGATGGTCGAATCGCTGGCTTTGCTCGAAGGTTTCCATCTGGTGATGAGG
mRNA sequenceShow/hide mRNA sequence
AAATGCGAATGGATTCTGACATTTGTGAAGGATTTCAAGGAAAGTAGCAGTCTTTGCCATGGATCGATTTCCACTTATTCGCCTCAAGTCAGCTCTGATAGCGACTCCCT
GTCTGTTTGGTCTCCTCCCTCAATTGGGTGGGTGAAGATAAATGTGGATGCTGCATGTAAGGAAACTTTGTTTAGAACTGAAATTGGTGTTGTTGCCAGAGATGAAAGGG
GTCAAATTATTGCGGCTGTTTCTCGAAGGGTAGAAGCTTACCACGATCCATTGATGGTCGAATCGCTGGCTTTGCTCGAAGGTTTCCATCTGGTGATGAGG
Protein sequenceShow/hide protein sequence
KCEWILTFVKDFKESSSLCHGSISTYSPQVSSDSDSLSVWSPPSIGWVKINVDAACKETLFRTEIGVVARDERGQIIAAVSRRVEAYHDPLMVESLALLEGFHLVMR