; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001987 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001987
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor ILI6-like
Genome locationscaffold30:1490389..1490788
RNA-Seq ExpressionMS001987
SyntenyMS001987
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]3.1e-3596.74Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]1.2e-37100Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022933575.1 transcription factor ILI6-like [Cucurbita moschata]1.1e-3595.6Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022973084.1 transcription factor ILI6-like [Cucurbita maxima]4.8e-3696.7Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]6.3e-3696.7Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like1.5e-3596.74Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A2P5C8G6 Myc-type, basic helix-loop-helix (BHLH) domain containing protein4.4e-3594.51Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIR R+SDKVSAANVLQETCNYIRSLHREVDDLSERLSELLAT+DTAQAAIIRSLL Q
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like5.6e-38100Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1F586 transcription factor ILI6-like5.2e-3695.6Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1IDH8 transcription factor ILI6-like2.3e-3696.7Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI68.3e-3182.61Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V ++ VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q0DUR2 Transcription factor ILI68.3e-3182.61Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V ++ VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q338G6 Transcription factor ILI72.8e-2674.44Show/hide
Query:  SRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        SRRSRSR S ++RITD+QI DLVSKLQ LLPE R R +D+V +A VLQETC+YIRSLHREVDDLSERL+ELLA +D  TAQAA+IR LLM
Subjt:  SRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE61.2e-2980.43Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+ VLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE31.4e-3081.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.5e-3180.43Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+ VLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.0e-3181.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.8e-2367.74Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM
        MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI   R+SDKVSA+ VLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 33.4e-2770.65Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+  +R+S KVSA+ VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein9.5e-2264.52Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM
        MS+RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI + R+SDK SA+ VLQETCNYIR+L+REVD+LSERLS+LL +   D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGTTCAAGGATCACCGATGACCAAATTAACGATCTCGTCTCCAAGTTGCAGCAACTCCTCCCGGAGATTCGCCA
CAGGCAATCCGACAAGGTTTCGGCCGCGAATGTGTTGCAAGAGACATGTAACTACATAAGAAGCCTGCATAGAGAGGTTGATGATCTAAGTGAGAGACTTTCAGAGTTGT
TGGCCACGTCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGTTCAAGGATCACCGATGACCAAATTAACGATCTCGTCTCCAAGTTGCAGCAACTCCTCCCGGAGATTCGCCA
CAGGCAATCCGACAAGGTTTCGGCCGCGAATGTGTTGCAAGAGACATGTAACTACATAAGAAGCCTGCATAGAGAGGTTGATGATCTAAGTGAGAGACTTTCAGAGTTGT
TGGCCACGTCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAA
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ