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MS001994 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001994
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmini zinc finger
Genome locationscaffold30:1542238..1542513
RNA-Seq ExpressionMS001994
SyntenyMS001994
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006456 - ZF-HD homeobox protein, Cys/His-rich dimerisation domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023191.1 Mini zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-4092.39Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDG GGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

XP_022135253.1 mini zinc finger protein 3-like [Momordica charantia]1.3e-44100Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

XP_022921765.1 mini zinc finger protein 3-like [Cucurbita moschata]6.6e-4193.48Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDGSGGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

XP_022987207.1 mini zinc finger protein 3-like [Cucurbita maxima]1.5e-4092.39Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDGSGGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRR+VD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

XP_023516615.1 mini zinc finger protein 3-like [Cucurbita pepo subsp. pepo]5.6e-4092.39Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDGSGGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRREVD+EVVFEYSP NS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

TrEMBL top hitse value%identityAlignment
A0A0A0LSA6 ZF-HD dimerization-type domain-containing protein5.6e-3887.23Show/hide
Query:  MKKRLVVVKKSDGSGGRNR---SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKRLVVV+KSDGS GR     S SGS VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGRNR---SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

A0A5A7UWS7 Mini zinc finger protein 3-like7.4e-3886.32Show/hide
Query:  MKKRLVVVKKSDGSGGRNR----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKRLVVVKKSDGS GR      + SGS VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGRNR----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

A0A6J1C4B2 mini zinc finger protein 3-like6.2e-45100Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

A0A6J1E6Q9 mini zinc finger protein 3-like3.2e-4193.48Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDGSGGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

A0A6J1J9R5 mini zinc finger protein 3-like7.1e-4192.39Show/hide
Query:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR+VVVKKSDGSGGR NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL CAAC CHRNFHRR+VD+EVVFEYSPPNS
Subjt:  MKKRLVVVKKSDGSGGR-NRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

SwissProt top hitse value%identityAlignment
B8BIU8 Mini zinc finger protein 16.7e-2067.74Show/hide
Query:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS
        R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL+CAAC CHR+FHRREV++
Subjt:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS

Q2Q493 Mini zinc finger protein 35.6e-2767.03Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR VV+K+   S     + S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +AL CAAC CHRNFHRREVD+EVV EYSPPN+
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

Q2RB28 Mini zinc finger protein 16.7e-2067.74Show/hide
Query:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS
        R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL+CAAC CHR+FHRREV++
Subjt:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS

Q9CA51 Mini zinc finger protein 11.6e-2658.42Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSG----------SVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPN
        MKKR +V+K+   +   + S +           S VRY ECQKNHAA +GG+AVDGCREFMA G +GT +AL CAAC CHRNFHR+EVD+EVV EYSPPN
Subjt:  MKKRLVVVKKSDGSGGRNRSGSG----------SVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPN

Query:  S
        +
Subjt:  S

Q9LJW5 Mini zinc finger protein 21.1e-2255.67Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGS-----VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        M+KR VV++++        S + S      VRY ECQKNHAA +GG+AVDGCREFMA RGE+GT  AL CAAC CHR+FHRRE+++EVV + + P S
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGS-----VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

Arabidopsis top hitse value%identityAlignment
AT1G18835.1 mini zinc finger4.0e-2867.03Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        MKKR VV+K+   S     + S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +AL CAAC CHRNFHRREVD+EVV EYSPPN+
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

AT1G74660.1 mini zinc finger 11.2e-2758.42Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSG----------SVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPN
        MKKR +V+K+   +   + S +           S VRY ECQKNHAA +GG+AVDGCREFMA G +GT +AL CAAC CHRNFHR+EVD+EVV EYSPPN
Subjt:  MKKRLVVVKKSDGSGGRNRSGSG----------SVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPN

Query:  S
        +
Subjt:  S

AT2G18350.1 homeobox protein 242.0e-1950Show/hide
Query:  VVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYS
        + +  +  S  R ++ S    RY ECQKNHAA  GG  VDGC EFM+ GE+GT E+L+CAAC CHR+FHR+E+D   V  ++
Subjt:  VVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYS

AT3G28917.1 mini zinc finger 27.8e-2455.67Show/hide
Query:  MKKRLVVVKKSDGSGGRNRSGSGS-----VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS
        M+KR VV++++        S + S      VRY ECQKNHAA +GG+AVDGCREFMA RGE+GT  AL CAAC CHR+FHRRE+++EVV + + P S
Subjt:  MKKRLVVVKKSDGSGGRNRSGSGS-----VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS

AT4G24660.1 homeobox protein 226.2e-2164.79Show/hide
Query:  SDGSGGRNRS-GSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS
        S G GG  RS G G+ +RY EC KNHA  +GG AVDGC EFM  GEDGT +AL CAAC CHRNFHR+E +S
Subjt:  SDGSGGRNRS-GSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCATGAAGAAAAGGCTGGTGGTGGTGAAGAAATCTGATGGTTCGGGCGGCCGAAACCGCTCCGGTTCAGGCTCGGTGGTCCGCTACGCCGAGTGCCAGAAGAATCACGC
GGCGAAGCTCGGGGGGTTCGCGGTGGACGGGTGCCGGGAATTCATGGCCAGGGGAGAGGATGGGACTGAGGAGGCTCTAATTTGTGCCGCTTGTAGCTGCCACAGGAATT
TTCACAGAAGGGAGGTGGATTCTGAAGTGGTGTTTGAGTATTCCCCTCCAAACTCC
mRNA sequenceShow/hide mRNA sequence
ACCATGAAGAAAAGGCTGGTGGTGGTGAAGAAATCTGATGGTTCGGGCGGCCGAAACCGCTCCGGTTCAGGCTCGGTGGTCCGCTACGCCGAGTGCCAGAAGAATCACGC
GGCGAAGCTCGGGGGGTTCGCGGTGGACGGGTGCCGGGAATTCATGGCCAGGGGAGAGGATGGGACTGAGGAGGCTCTAATTTGTGCCGCTTGTAGCTGCCACAGGAATT
TTCACAGAAGGGAGGTGGATTCTGAAGTGGTGTTTGAGTATTCCCCTCCAAACTCC
Protein sequenceShow/hide protein sequence
TMKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALICAACSCHRNFHRREVDSEVVFEYSPPNS