; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002000 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002000
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHNH domain-containing protein
Genome locationscaffold30:1578732..1578975
RNA-Seq ExpressionMS002000
SyntenyMS002000
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587544.1 hypothetical protein SDJN03_16109, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2198.18Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
XP_004138170.1 uncharacterized protein LOC101222461 [Cucumis sativus]9.1e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
XP_008453210.1 PREDICTED: uncharacterized protein LOC103493997 [Cucumis melo]9.1e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
XP_023529236.1 uncharacterized protein LOC111792136 [Cucurbita pepo subsp. pepo]1.6e-2198.18Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
XP_038880609.1 uncharacterized protein LOC120072255 [Benincasa hispida]9.1e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
TrEMBL top hitse value%identityAlignment
A0A0A0LUI5 HNH domain-containing protein4.4e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
A0A1S3BWU4 uncharacterized protein LOC1034939974.4e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
A0A5A7US43 HNH endonuclease4.4e-22100Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
A0A6J1C2S9 uncharacterized protein LOC1110074222.2e-2196.36Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNR+KGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGC+IQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
A0A6J1I688 uncharacterized protein LOC1114714897.5e-2298.18Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G47490.1 HNH endonuclease5.9e-1976.36Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        A VNRSKGN+T+ISR+ELIQ+SSYCRV+GRDMDL+EL+AYGNV R   S GCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
AT3G47490.3 HNH endonuclease5.9e-1976.36Show/hide
Query:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
        A VNRSKGN+T+ISR+ELIQ+SSYCRV+GRDMDL+EL+AYGNV R   S GCRIQ
Subjt:  ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAACCGTTAATCGATCAAAGGGAAACCGTACTGAAATTTCAAGGGCAGAACTAATACAAAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGATCTTCTTGAATT
ATCTGCCTATGGAAATGTACATCGTGGACAAGACTCTGGAGGGTGTAGAATTCAG
mRNA sequenceShow/hide mRNA sequence
GCAACCGTTAATCGATCAAAGGGAAACCGTACTGAAATTTCAAGGGCAGAACTAATACAAAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGATCTTCTTGAATT
ATCTGCCTATGGAAATGTACATCGTGGACAAGACTCTGGAGGGTGTAGAATTCAG
Protein sequenceShow/hide protein sequence
ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ