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MS002001 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002001
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHNH domain-containing protein
Genome locationscaffold30:1580770..1581180
RNA-Seq ExpressionMS002001
SyntenyMS002001
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138170.1 uncharacterized protein LOC101222461 [Cucumis sativus]4.1e-5581.82Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR +KESKKKTRPSSPLRDRTG+    ESR  GS PS+++PS+SL +RDLVTG+  LL DLK SPDDSVS+YNPRSFPHSVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

XP_022135472.1 uncharacterized protein LOC111007422 [Momordica charantia]1.0e-69100Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

XP_022933556.1 uncharacterized protein LOC111440950 [Cucurbita moschata]1.4e-5583.33Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR++KESKKKTRPSSPLRDRT  S RFESRR+GS  S ++PS+SL +RDLVT +  LL DLKLSPDDSVSDYNPRSFP+SVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

XP_022972967.1 uncharacterized protein LOC111471489 [Cucurbita maxima]1.4e-5583.33Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR++KESKKKTRPSSPLRDRT  S RFESRR+GS  S ++PS+SL +RDLVT +  LL DLKLSPDDSVSDYNPRSFP+SVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

XP_038880609.1 uncharacterized protein LOC120072255 [Benincasa hispida]1.8e-5582.58Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR  KESKKKTR SSPLRDRTG     ESRR GS PS+++PS+SL +RDL+TG+  LL DLKLSPDD VSDYNPRSFPHSVKQQCWDKAEKIKGRDP+RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

TrEMBL top hitse value%identityAlignment
A0A0A0LUI5 HNH domain-containing protein2.0e-5581.82Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR +KESKKKTRPSSPLRDRTG+    ESR  GS PS+++PS+SL +RDLVTG+  LL DLK SPDDSVS+YNPRSFPHSVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

A0A5A7US43 HNH endonuclease4.4e-5581.82Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR +KESKKKTRPSSPLRDRTGA    ES R GS PS+++PS+SL +RDLVTG+  LL DLK SP+DSVS+YNPRSFPHSVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

A0A6J1C2S9 uncharacterized protein LOC1110074224.9e-70100Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

A0A6J1EZE0 uncharacterized protein LOC1114409506.8e-5683.33Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR++KESKKKTRPSSPLRDRT  S RFESRR+GS  S ++PS+SL +RDLVT +  LL DLKLSPDDSVSDYNPRSFP+SVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

A0A6J1I688 uncharacterized protein LOC1114714896.8e-5683.33Show/hide
Query:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW
        MR++KESKKKTRPSSPLRDRT  S RFESRR+GS  S ++PS+SL +RDLVT +  LL DLKLSPDDSVSDYNPRSFP+SVKQQCWDKAEKIKGRDP RW
Subjt:  MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRDALGN VFRKLVGCPGCLCHDYDHILPYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein1.5e-1549.23Show/hide
Query:  SVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARWRRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        S  +  PR F    K +CW  A+ + GR P RWR+D  GNIV ++   C GCLC +YDHI+PYSK
Subjt:  SVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARWRRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

AT3G47490.1 HNH endonuclease1.3e-3053.03Show/hide
Query:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW
        T+   +    SSP + R   S    +R  G +R   +  S++L +R+          ++ L P     D N  PRSFP+SVKQQCW+KAEKIKGRDP RW
Subjt:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRD LGNIVFRKLVGCPGCLCHDYDHI+PYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK

AT3G47490.2 HNH endonuclease8.9e-3253.33Show/hide
Query:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW
        T+   +    SSP + R   S    +R  G +R   +  S++L +R+          ++ L P     D N  PRSFP+SVKQQCW+KAEKIKGRDP RW
Subjt:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSKVVP
        RRD LGNIVFRKLVGCPGCLCHDYDHI+PYSKV P
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSKVVP

AT3G47490.3 HNH endonuclease1.3e-3053.03Show/hide
Query:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW
        T+   +    SSP + R   S    +R  G +R   +  S++L +R+          ++ L P     D N  PRSFP+SVKQQCW+KAEKIKGRDP RW
Subjt:  TKESKKKTRPSSPLRDRTGASDRFESRRNG-SRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYN--PRSFPHSVKQQCWDKAEKIKGRDPARW

Query:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK
        RRD LGNIVFRKLVGCPGCLCHDYDHI+PYSK
Subjt:  RRDALGNIVFRKLVGCPGCLCHDYDHILPYSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCTACCAAAGAATCGAAGAAGAAAACTCGTCCATCATCACCGCTCAGGGACCGAACCGGCGCCTCCGACAGGTTCGAATCGAGGCGTAATGGGTCTCGCCCATC
AACCATCACTCCCTCTTCTTCCCTTCGGGAACGTGACCTCGTCACCGGCGACGACTGTCTTCTCCGAGACCTAAAACTCTCTCCCGATGACTCAGTTTCAGACTATAATC
CCCGTAGCTTTCCTCACAGTGTGAAGCAGCAATGCTGGGACAAGGCCGAGAAGATCAAAGGAAGGGACCCAGCTCGGTGGCGCCGAGATGCTCTTGGTAACATCGTTTTC
CGGAAGCTTGTTGGCTGCCCCGGTTGTCTTTGCCATGATTATGATCACATTTTGCCTTACTCTAAGGTAGTTCCCTCATCG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCTACCAAAGAATCGAAGAAGAAAACTCGTCCATCATCACCGCTCAGGGACCGAACCGGCGCCTCCGACAGGTTCGAATCGAGGCGTAATGGGTCTCGCCCATC
AACCATCACTCCCTCTTCTTCCCTTCGGGAACGTGACCTCGTCACCGGCGACGACTGTCTTCTCCGAGACCTAAAACTCTCTCCCGATGACTCAGTTTCAGACTATAATC
CCCGTAGCTTTCCTCACAGTGTGAAGCAGCAATGCTGGGACAAGGCCGAGAAGATCAAAGGAAGGGACCCAGCTCGGTGGCGCCGAGATGCTCTTGGTAACATCGTTTTC
CGGAAGCTTGTTGGCTGCCCCGGTTGTCTTTGCCATGATTATGATCACATTTTGCCTTACTCTAAGGTAGTTCCCTCATCG
Protein sequenceShow/hide protein sequence
MRATKESKKKTRPSSPLRDRTGASDRFESRRNGSRPSTITPSSSLRERDLVTGDDCLLRDLKLSPDDSVSDYNPRSFPHSVKQQCWDKAEKIKGRDPARWRRDALGNIVF
RKLVGCPGCLCHDYDHILPYSKVVPSS