; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002002 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002002
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold30:1583330..1584439
RNA-Seq ExpressionMS002002
SyntenyMS002002
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0009644 - response to high light intensity (biological process)
GO:0009645 - response to low light intensity stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0019904 - protein domain specific binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453211.1 PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo]2.1e-13795.24Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFLSGSS KLHR LSVKPV+A SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE GYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

XP_022134700.1 chlorophyll a-b binding protein P4, chloroplastic [Momordica charantia]5.6e-14399.6Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCAS SRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

XP_022933773.1 chlorophyll a-b binding protein P4, chloroplastic [Cucurbita moschata]7.9e-13796.03Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRP AS SRFL+GS  KLHRELSVKPVAA  SSS KVEAKKGEWLPGLPSP YLNGSL GDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

XP_023516219.1 chlorophyll a-b binding protein P4, chloroplastic [Cucurbita pepo subsp. pepo]7.9e-13795.24Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFL+GSS KLHR LSVKPVAA SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPL LAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT EA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKE+ANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF GN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

XP_038880569.1 chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida]1.9e-13896.03Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFLSGSS KLHRELSVKPV+A SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE GYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

TrEMBL top hitse value%identityAlignment
A0A1S3BV45 Chlorophyll a-b binding protein, chloroplastic1.0e-13795.24Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFLSGSS KLHR LSVKPV+A SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE GYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

A0A5A7UWR2 Chlorophyll a-b binding protein, chloroplastic1.0e-13795.24Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFLSGSS KLHR LSVKPV+A SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE GYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+NLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

A0A6J1BZ19 Chlorophyll a-b binding protein, chloroplastic2.7e-14399.6Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCAS SRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

A0A6J1F5S4 Chlorophyll a-b binding protein, chloroplastic3.8e-13796.03Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRP AS SRFL+GS  KLHRELSVKPVAA  SSS KVEAKKGEWLPGLPSP YLNGSL GDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

A0A6J1JG60 Chlorophyll a-b binding protein, chloroplastic8.5e-13794.84Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAAVFRPCA+ SRFL+GSS KLHR LSVKPVAA SSSS KVEAKKGEWLPGLPSP YLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT EA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKE+ANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF GN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

SwissProt top hitse value%identityAlignment
P13869 Chlorophyll a-b binding protein, chloroplastic1.5e-6148.54Show/hide
Query:  ASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT
        A+ + FL G   ++ + ++     +++ S++  +  +  W PG   P +L+GSLPGD GFDPLGL  DPE+L+W  QAELV+ RWAMLG AG+ +PE  T
Subjt:  ASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT

Query:  KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTLEAKEKEIANGRL
        KIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KEI NGRL
Subjt:  KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTLEAKEKEIANGRL

Query:  AMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
        AMLA +G   QH  TG GP +NL  H++DP H TI   F
Subjt:  AMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF

P27521 Chlorophyll a-b binding protein 4, chloroplastic9.4e-12585.2Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPV-AALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG
        MATVTT ASA++FRPC S  RFL+GSS +L+R+LS   + ++  +SS KVEAKKGEWLPGL SP YL GSL GDNGFDPLGLAEDPENL+WFVQAELVNG
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPV-AALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG

Query:  RWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLE
        RWAMLGVAGMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT E
Subjt:  RWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLE

Query:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
        AKEKE+ANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SDPWHNTIVQTF
Subjt:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF

Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)2.4e-8876.5Show/hide
Query:  KGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHY
        KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+LRWFVQA++VNGRWAMLGVAGML+PEV TK G++NAP+W    GK  YFASSST   +  +   Y
Subjt:  KGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHY

Query:  VEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGG
        VEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP LE KEKE+ANGRLAMLAFLGF+VQHNV GKGPFENL QH++DPWHNTI+QT  G
Subjt:  VEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGG

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic3.1e-12887.3Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
        MATVTTQASAA+F PC   SRFL GSS KL+R ++ +PV    S+S KVEAKKGEWLPGL SPGYL GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGR

Query:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA
        WAMLGVAGMLLPEVFT IGIIN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPTLEA
Subjt:  WAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQT GGN
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic1.3e-6249.6Show/hide
Query:  TQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGE--WLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM
        + A AA+  P      FL G   +L ++L+V  V+   +S   V A      W PG   P +L+GSLPGD GFDPLGL+ DP++L+W VQAE+V+ RWAM
Subjt:  TQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGE--WLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM

Query:  LGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APT
        LG AG+ +PE  TKIGI+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   +VGYPGG+ F+PL +     A  
Subjt:  LGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APT

Query:  LEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
         E + KEI NGRLAMLA +G   QH  TG GP +NL  H++DP H TI   F
Subjt:  LEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF

Arabidopsis top hitse value%identityAlignment
AT1G19150.1 photosystem I light harvesting complex gene 68.1e-5544.44Show/hide
Query:  SGSSSKLHRE--LSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII
        S +  +L RE  + V+    +SS    +   +  W PG   P +L+GSLPGD GFDPLGL  DP+ L+WF QAEL++ RWAML V G+++PE   ++G I
Subjt:  SGSSSKLHRE--LSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII

Query:  NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF------APTLEAKEKEIANGRLAMLAF
            WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +     P  +VGYPGG++            P +  + KEI NGRLAMLAF
Subjt:  NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF------APTLEAKEKEIANGRLAMLAF

Query:  LGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
        LGF  Q   T + P ENL+ H++DP H  +   F
Subjt:  LGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF

AT1G45474.1 photosystem I light harvesting complex gene 57.3e-5648.28Show/hide
Query:  SSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ
        +SS + R +S    AA    +  V  ++  WLPGL  P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AMLGVAG+L  ++    GI N P 
Subjt:  SSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ

Query:  WYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFL
        WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  +PGS  ++  F    + +L   E GYPGG + NPL  A  ++     K KEI NGRLAM+A L
Subjt:  WYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFL

Query:  GFIVQHNVTGKGPFENLLQHISDPWHNTIVQT
        GF VQ +VT  GP +NL++H+S+PWH TI+QT
Subjt:  GFIVQHNVTGKGPFENLLQHISDPWHNTIVQT

AT1G45474.2 photosystem I light harvesting complex gene 57.3e-5648.28Show/hide
Query:  SSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ
        +SS + R +S    AA    +  V  ++  WLPGL  P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AMLGVAG+L  ++    GI N P 
Subjt:  SSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ

Query:  WYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFL
        WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  +PGS  ++  F    + +L   E GYPGG + NPL  A  ++     K KEI NGRLAM+A L
Subjt:  WYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFL

Query:  GFIVQHNVTGKGPFENLLQHISDPWHNTIVQT
        GF VQ +VT  GP +NL++H+S+PWH TI+QT
Subjt:  GFIVQHNVTGKGPFENLLQHISDPWHNTIVQT

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A46.7e-12685.2Show/hide
Query:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPV-AALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG
        MATVTT ASA++FRPC S  RFL+GSS +L+R+LS   + ++  +SS KVEAKKGEWLPGL SP YL GSL GDNGFDPLGLAEDPENL+WFVQAELVNG
Subjt:  MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPV-AALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG

Query:  RWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLE
        RWAMLGVAGMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT E
Subjt:  RWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLE

Query:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
        AKEKE+ANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SDPWHNTIVQTF
Subjt:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF

AT3G61470.1 photosystem I light harvesting complex gene 29.5e-6449.6Show/hide
Query:  TQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGE--WLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM
        + A AA+  P      FL G   +L ++L+V  V+   +S   V A      W PG   P +L+GSLPGD GFDPLGL+ DP++L+W VQAE+V+ RWAM
Subjt:  TQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGE--WLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM

Query:  LGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APT
        LG AG+ +PE  TKIGI+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   +VGYPGG+ F+PL +     A  
Subjt:  LGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APT

Query:  LEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF
         E + KEI NGRLAMLA +G   QH  TG GP +NL  H++DP H TI   F
Subjt:  LEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCGTCACGACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCTCCTGGTCGAGGTTCCTATCTGGGTCTTCGAGTAAACTCCACCGCGAGCTGTCGGTTAA
GCCCGTGGCCGCTTTGTCATCTTCATCCTTGAAGGTGGAAGCAAAGAAGGGAGAGTGGTTGCCAGGTCTGCCGTCTCCGGGATACCTGAATGGCAGTCTTCCGGGGGACA
ATGGATTCGACCCACTGGGGCTGGCGGAGGACCCAGAGAACTTGCGGTGGTTCGTGCAGGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGGGTGGCCGGAATGCTG
CTGCCGGAGGTGTTTACGAAGATCGGAATCATAAACGCGCCGCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCGTCGTCGACCCTGTTCGTGATCGAGTTCAT
TCTGTTCCATTACGTGGAAATCAGGAGATGGCAGGACATCAAAAACCCAGGCAGCGTCAACCAAGACCCCATTTTCAAGCAGTACAGTTTGCCCCCAAACGAAGTGGGCT
ACCCAGGCGGCATTTTCAACCCTCTCAACTTCGCTCCCACTCTCGAGGCCAAGGAGAAGGAGATCGCCAACGGGAGACTGGCAATGTTGGCGTTCTTGGGGTTCATAGTT
CAACATAATGTGACTGGAAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCAGACCCGTGGCACAACACCATTGTCCAGACCTTCGGTGGGAAT
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCGTCACGACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCTCCTGGTCGAGGTTCCTATCTGGGTCTTCGAGTAAACTCCACCGCGAGCTGTCGGTTAA
GCCCGTGGCCGCTTTGTCATCTTCATCCTTGAAGGTGGAAGCAAAGAAGGGAGAGTGGTTGCCAGGTCTGCCGTCTCCGGGATACCTGAATGGCAGTCTTCCGGGGGACA
ATGGATTCGACCCACTGGGGCTGGCGGAGGACCCAGAGAACTTGCGGTGGTTCGTGCAGGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGGGTGGCCGGAATGCTG
CTGCCGGAGGTGTTTACGAAGATCGGAATCATAAACGCGCCGCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCGTCGTCGACCCTGTTCGTGATCGAGTTCAT
TCTGTTCCATTACGTGGAAATCAGGAGATGGCAGGACATCAAAAACCCAGGCAGCGTCAACCAAGACCCCATTTTCAAGCAGTACAGTTTGCCCCCAAACGAAGTGGGCT
ACCCAGGCGGCATTTTCAACCCTCTCAACTTCGCTCCCACTCTCGAGGCCAAGGAGAAGGAGATCGCCAACGGGAGACTGGCAATGTTGGCGTTCTTGGGGTTCATAGTT
CAACATAATGTGACTGGAAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCAGACCCGTGGCACAACACCATTGTCCAGACCTTCGGTGGGAAT
Protein sequenceShow/hide protein sequence
MATVTTQASAAVFRPCASWSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML
LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIV
QHNVTGKGPFENLLQHISDPWHNTIVQTFGGN