; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002004 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002004
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 4, chloroplastic
Genome locationscaffold30:1593893..1594889
RNA-Seq ExpressionMS002004
SyntenyMS002004
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domainsIPR034570 - Photosynthetic NDH subunit of subcomplex B 4, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134651.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Momordica charantia]5.7e-8993.92Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKL+  S  FS   L+  TTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

XP_022933404.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]5.6e-7682.87Show/hide
Query:  MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIK  L ++SNLH HKST IP+S L+  S   +     +T   KR+RGSLG+VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

XP_022987205.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima]4.3e-7680.56Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV
        MAKAIAGFS+I P L++SNLH HK+T+IP  KL   S+  +     +    KR+RGS+GKV+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNV
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

XP_023516363.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo]8.6e-7781.11Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV
        MAKAIAGFS+I P L++SNLH HKST+IP+ KL   S+  +     +    KR+RGS+GKV+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNV
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

XP_038880039.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]7.7e-7883.43Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIKP L++SNLHQHKST+IP SKL++ S +F+      +T   K  RGSLGK+NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQ+VGGL+ELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

TrEMBL top hitse value%identityAlignment
A0A5A7UWT7 Photosynthetic NDH subunit of subcomplex B 44.6e-7683.43Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIKP L++SNLH  KS +IP+SKL++ S  FS   L  +    K +RGSL KVNAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

A0A6J1BYE8 photosynthetic NDH subunit of subcomplex B 4, chloroplastic2.8e-8993.92Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKL+  S  FS   L+  TTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

A0A6J1E2I6 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like4.6e-7680Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV
        MAKAIAGFS++ P L++SNLH HKST+IP  KL   S+  +     +    KR+RGS+GKV+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNV
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEAG+K
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

A0A6J1EZP2 photosynthetic NDH subunit of subcomplex B 4, chloroplastic2.7e-7682.87Show/hide
Query:  MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MAKAIAGFSIIK  L ++SNLH HKST IP+S L+  S   +     +T   KR+RGSLG+VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKN
Subjt:  MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

A0A6J1JG67 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like2.1e-7680.56Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV
        MAKAIAGFS+I P L++SNLH HK+T+IP  KL   S+  +     +    KR+RGS+GKV+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNV
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

SwissProt top hitse value%identityAlignment
Q8RXS1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic6.0e-4959.12Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MA+A   F+    H+ +S  H  K    P         + LS   +    +   RGSL    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

Arabidopsis top hitse value%identityAlignment
AT1G18730.1 NDH dependent flow 64.3e-5059.12Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN
        MA+A   F+    H+ +S  H  K    P         + LS   +    +   RGSL    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKN
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKN

Query:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        VY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Subjt:  VYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

AT1G18730.2 NDH dependent flow 63.6e-3352.03Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE
        MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RGSL    A P D  LMAV+V  ++G RD+IT K + HLSD+
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE

Query:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYET
        AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYET
Subjt:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYET

AT1G18730.3 NDH dependent flow 61.1e-5060Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE
        MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RGSL    A P D  LMAV+V  ++G RD+IT K + HLSD+
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE

Query:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
        AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Subjt:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

AT1G18730.4 NDH dependent flow 63.6e-3352.03Show/hide
Query:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE
        MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RGSL    A P D  LMAV+V  ++G RD+IT K + HLSD+
Subjt:  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RGSLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDE

Query:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYET
        AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYET
Subjt:  AIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCACACCTCAATACTTCTAATCTCCACCAACACAAATCAACCATCATCCCATATTCCAAACTGGTAACAGTATC
ATCTTTCTCCCTTTCGCCTCTAAATTCAATTACTACTACAAAAAAGCGCGAGAGGGGCTCTCTGGGGAAAGTAAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAG
TTGATCACATGGATGGCCAAAGGGACCTCATAACCCACAAATCAATAGTGCATCTCAGCGATGAAGCTATAAAGAATGTCTATAGTCTTTACATTATGTTCACCTGTTGG
GGATGCCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGAAAAGATGGAGGAGATGGAACAGGGCATTGGGTCTACGAAACGCAAGAGGACAT
TGAGGAAGCAGCAAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGGCTTAGAGAGCTGGAAGAGGCTGGCAAGAAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCACACCTCAATACTTCTAATCTCCACCAACACAAATCAACCATCATCCCATATTCCAAACTGGTAACAGTATC
ATCTTTCTCCCTTTCGCCTCTAAATTCAATTACTACTACAAAAAAGCGCGAGAGGGGCTCTCTGGGGAAAGTAAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAG
TTGATCACATGGATGGCCAAAGGGACCTCATAACCCACAAATCAATAGTGCATCTCAGCGATGAAGCTATAAAGAATGTCTATAGTCTTTACATTATGTTCACCTGTTGG
GGATGCCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGAAAAGATGGAGGAGATGGAACAGGGCATTGGGTCTACGAAACGCAAGAGGACAT
TGAGGAAGCAGCAAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGGCTTAGAGAGCTGGAAGAGGCTGGCAAGAAA
Protein sequenceShow/hide protein sequence
MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCW
GCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK