; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002007 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002007
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHNH domain-containing protein
Genome locationscaffold30:1703736..1705276
RNA-Seq ExpressionMS002007
SyntenyMS002007
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR002711 - HNH endonuclease
IPR003615 - HNH nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453224.1 PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]2.0e-9192.98Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSG+GDERPRFFD KAKA CWAKAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKS+KDDVD S+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

XP_022135260.1 uncharacterized protein LOC111007267 [Momordica charantia]1.7e-9898.84Show/hide
Query:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR
        TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTA+NCQILQTR
Subjt:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR

Query:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS
        VNRFKSDKDDVDASQLKGYSCDV+FTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS
Subjt:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS

XP_022933741.1 uncharacterized protein LOC111441065 [Cucurbita moschata]2.2e-9395.91Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSGNG+ERPRFFDTKAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKSDKDDVD SQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

XP_023531696.1 uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo]2.2e-9395.91Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSGNG+ERPRFFDTKAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKSDKDDVD SQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

XP_038878253.1 uncharacterized protein LOC120070538 [Benincasa hispida]1.4e-9292.4Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGGHRHSGSG+GDERPRFFDTKAKAICW KAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKS+++DVD S+LKGYSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

TrEMBL top hitse value%identityAlignment
A0A1S3BVP6 uncharacterized protein LOC103494011 isoform X29.8e-9292.98Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSG+GDERPRFFD KAKA CWAKAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKS+KDDVD S+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

A0A5A7UWI1 HNH endonuclease9.8e-9292.98Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSG+GDERPRFFD KAKA CWAKAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKS+KDDVD S+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

A0A6J1C0N7 uncharacterized protein LOC1110072678.3e-9998.84Show/hide
Query:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR
        TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTA+NCQILQTR
Subjt:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR

Query:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS
        VNRFKSDKDDVDASQLKGYSCDV+FTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS
Subjt:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS

A0A6J1EZW3 uncharacterized protein LOC1114410651.0e-9395.91Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSGNG+ERPRFFDTKAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKSDKDDVD SQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

A0A6J1I7G1 uncharacterized protein LOC1114715091.0e-9395.91Show/hide
Query:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
        TS SPSPTRSRGG R SGSGNG+ERPRFFDTKAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV
Subjt:  TSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRV

Query:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        NRFKSDKDDVD SQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
Subjt:  NRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein1.4e-7169.94Show/hide
Query:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR
        T +  P P+      R +   NG+ERPRFFD KAK  CWA ADIVPGRHP+RWRKD AGN+VCKRF NC GCLCFEYDHIVP+SKGGES A+NCQILQTR
Subjt:  TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTR

Query:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS
        VNRFKS +++VDA+ LK YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LPS
Subjt:  VNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS

AT3G47490.1 HNH endonuclease5.4e-3445.52Show/hide
Query:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDASQLK
        SG G+ +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVP+SKGG+ST +NCQ+LQ +VNR K +K D+  S+L 
Subjt:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDASQLK

Query:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
          S   +   +++D+IE+  YG+V R      CR
Subjt:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR

AT3G47490.2 HNH endonuclease3.5e-1750Show/hide
Query:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSK
        SG G+ +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVP+SK
Subjt:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSK

AT3G47490.3 HNH endonuclease2.1e-3039.61Show/hide
Query:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFS--------------------KGGESTADNCQIL
        SG G+ +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVP+S                    KGG+ST +NCQ+L
Subjt:  SGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFS--------------------KGGESTADNCQIL

Query:  QTRVNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
        Q +VNR K +K D+  S+L   S   +   +++D+IE+  YG+V R      CR
Subjt:  QTRVNRFKSDKDDVDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTACTTCCAGATCGCCGTCGCCAACGCGTTCGCGCGGCGGACATAGACACAGTGGCTCCGGCAATGGGGACGAACGGCCGAGATTTTTCGACACCAAAGCGAAAGCCAT
TTGTTGGGCCAAGGCCGACATTGTCCCCGGTCGGCACCCCGACCGATGGCGTAAGGACGCCGCGGGTAACGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGCTGCCTCT
GCTTCGAGTACGATCACATTGTCCCCTTCTCCAAAGGCGGCGAGTCAACGGCAGATAATTGCCAGATTCTTCAAACGAGGGTTAACAGATTCAAATCGGATAAAGATGAT
GTCGATGCATCTCAGTTGAAAGGCTACTCCTGTGATGTCAAGTTTACCGACAAGGAACTTGACATAATTGAAATGGCTGTTTATGGAGACGTAATCCGGCCAGGGAACCA
GTGTCGTTGTAGAACAGTTTCAGAAATGCTGGGACAGTATAAATCAAAGGACCGCCTGGCCCCCTGCAAGCTGCCATCT
mRNA sequenceShow/hide mRNA sequence
ACTACTTCCAGATCGCCGTCGCCAACGCGTTCGCGCGGCGGACATAGACACAGTGGCTCCGGCAATGGGGACGAACGGCCGAGATTTTTCGACACCAAAGCGAAAGCCAT
TTGTTGGGCCAAGGCCGACATTGTCCCCGGTCGGCACCCCGACCGATGGCGTAAGGACGCCGCGGGTAACGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGCTGCCTCT
GCTTCGAGTACGATCACATTGTCCCCTTCTCCAAAGGCGGCGAGTCAACGGCAGATAATTGCCAGATTCTTCAAACGAGGGTTAACAGATTCAAATCGGATAAAGATGAT
GTCGATGCATCTCAGTTGAAAGGCTACTCCTGTGATGTCAAGTTTACCGACAAGGAACTTGACATAATTGAAATGGCTGTTTATGGAGACGTAATCCGGCCAGGGAACCA
GTGTCGTTGTAGAACAGTTTCAGAAATGCTGGGACAGTATAAATCAAAGGACCGCCTGGCCCCCTGCAAGCTGCCATCT
Protein sequenceShow/hide protein sequence
TTSRSPSPTRSRGGHRHSGSGNGDERPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDD
VDASQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPS