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MS002021 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002021
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
Genome locationscaffold30:1845587..1846038
RNA-Seq ExpressionMS002021
SyntenyMS002021
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011709 - Domain of unknown function DUF1605


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011660328.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis sativus]9.9e-3997.47Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

XP_021803566.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like, partial [Prunus avium]1.3e-3887.21Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL
        G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGL+QVLPRWV+YHELV T+KEYMRQVTELKPEWLVEIAPH+YQ+KDVEDC +SLSL
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL

XP_022134864.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Momordica charantia]1.5e-39100Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

XP_022134868.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2 [Momordica charantia]1.5e-39100Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

XP_038879655.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida]2.2e-3897.47Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPHS KLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

TrEMBL top hitse value%identityAlignment
A0A0A0LUM2 Uncharacterized protein4.8e-3997.47Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

A0A1S3BVU3 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH11.4e-3896.2Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

A0A6J1BZI7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X17.4e-40100Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

A0A6J1C379 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X27.4e-40100Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

A0A6P5RR94 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like6.2e-3987.21Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL
        G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGL+QVLPRWV+YHELV T+KEYMRQVTELKPEWLVEIAPH+YQ+KDVEDC +SLSL
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL

SwissProt top hitse value%identityAlignment
F4IJV4 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH63.9e-3887.34Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYH+LV TSKEYMRQVTELKPEWL+EIAPH+YQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

F4JMJ3 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH88.7e-3070Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLP-RWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPHS KLQKNGSYR +K PQTV++HP+SGL    P +W+VYHELV T+KEYMR  TE+KPEWL+EIAPH+Y+LKD+ED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLP-RWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

O60231 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX161.1e-2155.7Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        GYF H+ +L ++G YRT+K  QTV IHP+S L +  PRW++YHELV T+KE+MRQV E++  WL+E+APH+Y+ K++ED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX162.3e-2260.76Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+F +S KL+K+G +RT KH Q+V IHPSS L Q  P+WVVYHELV T+KE+MRQ+ E++  WL EIAPH Y+ KDV D
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

Q8VY00 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH13.0e-3887.34Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELKPEWL+E+APH+YQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

Arabidopsis top hitse value%identityAlignment
AT1G32490.1 RNA helicase family protein2.1e-3987.34Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELKPEWL+E+APH+YQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

AT1G32490.2 RNA helicase family protein2.1e-3987.34Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELKPEWL+E+APH+YQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

AT2G35340.1 helicase domain-containing protein2.8e-3987.34Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED
        G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYH+LV TSKEYMRQVTELKPEWL+EIAPH+YQLKDVED
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVED

AT3G26560.1 ATP-dependent RNA helicase, putative9.2e-1951.32Show/hide
Query:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKD
        G+F H  +      YRT+   Q V+IHPSS L Q  P WV+YH+LV T+KEYMR+VT + P+WLVE+AP F+++ D
Subjt:  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKD

AT4G18465.1 RNA helicase family protein3.9e-1749.33Show/hide
Query:  GYFPHSGKLQ--KNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQ
        G+F ++ +L+   NG Y+TI+  + V+IHPSS L +V P+WVVY  +V T ++YMR V  + P WL E+APHFYQ
Subjt:  GYFPHSGKLQ--KNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTTACTTCCCTCATTCTGGAAAGTTGCAAAAGAATGGCTCGTATCGGACCATTAAGCATCCGCAGACAGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTTCTTCC
AAGATGGGTTGTATACCATGAATTGGTATGCACCTCCAAGGAGTATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTACCAGC
TCAAGGACGTGGAAGATTGTATGCTCTCTCTCTCTCTC
mRNA sequenceShow/hide mRNA sequence
GGTTACTTCCCTCATTCTGGAAAGTTGCAAAAGAATGGCTCGTATCGGACCATTAAGCATCCGCAGACAGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTTCTTCC
AAGATGGGTTGTATACCATGAATTGGTATGCACCTCCAAGGAGTATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTACCAGC
TCAAGGACGTGGAAGATTGTATGCTCTCTCTCTCTCTC
Protein sequenceShow/hide protein sequence
GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL