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MS002043 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002043
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFCP1 homology domain-containing protein
Genome locationscaffold30:1990715..1991660
RNA-Seq ExpressionMS002043
SyntenyMS002043
Gene Ontology termsNA
InterPro domainsIPR004274 - FCP1 homology domain
IPR023214 - HAD superfamily
IPR036412 - HAD-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135018.1 uncharacterized protein LOC111007122 [Momordica charantia]2.9e-6299.12Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDDSPYKALRNP
Subjt:  LLDDSPYKALRNP

XP_023001681.1 uncharacterized protein LOC111495745 isoform X1 [Cucurbita maxima]1.1e-5688.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+MRDSRHKLLFCWDQSHCTTTRFTTIEN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

XP_023001699.1 uncharacterized protein LOC111495745 isoform X2 [Cucurbita maxima]1.1e-5688.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+MRDSRHKLLFCWDQSHCTTTRFTTIEN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

XP_023531279.1 uncharacterized protein LOC111793569 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-5688.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+MRDSRHKLLFCWDQSHCTTTRFTTIEN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

XP_038879030.1 uncharacterized protein LOC120071075 isoform X1 [Benincasa hispida]3.3e-5891.15Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNL+MLV+FLMRDSRHKLLFCWDQSHCTTTRFTTIEN+KKPL+LKEL KIWEN++PNLPWKKG++DASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDDSPYKALRNP
Subjt:  LLDDSPYKALRNP

TrEMBL top hitse value%identityAlignment
A0A0A0LSG7 FCP1 homology domain-containing protein1.1e-5688.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTW+NLNMLV+FLMRDSRHKLLFCWDQSHCT TRF T+ENNKKPL+LKEL KIWENL+PNLPWKKG++  SNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDDSPYKALRNP
Subjt:  LLDDSPYKALRNP

A0A6J1C3M3 uncharacterized protein LOC1110071221.4e-6299.12Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDDSPYKALRNP
Subjt:  LLDDSPYKALRNP

A0A6J1F5L8 uncharacterized protein LOC1114410521.9e-5686.73Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+M+DSRHKLLFCWDQSHCTTTRFTT+EN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

A0A6J1KLW3 uncharacterized protein LOC111495745 isoform X15.1e-5788.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+MRDSRHKLLFCWDQSHCTTTRFTTIEN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

A0A6J1KNF4 uncharacterized protein LOC111495745 isoform X25.1e-5788.5Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        +VFKRPFCDDFLQFCFERFEVGIWSSRTWKNLN LV+F+MRDSRHKLLFCWDQSHCTTTRFTTIEN++KPL+LKEL KIWE+L+PNLPWKKG+Y+ASNTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDD+PYKALRNP
Subjt:  LLDDSPYKALRNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36540.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein2.7e-1841.23Show/hide
Query:  VFKRPFCDDFLQFCFERFEVGIWSS--RTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNT
        V+KRPF ++F++FC ERFEVGIWSS      +LN+L+    R+             CT + + T+EN  KPL  K+L+K+++  +         + ASNT
Subjt:  VFKRPFCDDFLQFCFERFEVGIWSS--RTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNT

Query:  LLLDDSPYKALRNP
        + +DD PYKALRNP
Subjt:  LLLDDSPYKALRNP

AT2G36550.1 CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274)7.4e-0838.71Show/hide
Query:  DQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTLLLDDSPYKALRNP
        DQ  CT + + T+EN+ KPL  K+L+K+++  +         + ASNT+ +++ PYKAL NP
Subjt:  DQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTLLLDDSPYKALRNP

AT3G29760.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein2.1e-3958.41Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        ++FKRPFCD+FL+FCF++FEVGIWSSR   N+  +  FL+ D + KLLFCWD S+C TT   ++EN  K ++ K+LN++WE   P LPWK GDY+ +NT+
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        LLDDSPYKAL NP
Subjt:  LLDDSPYKALRNP

AT4G26190.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein5.8e-2951.33Show/hide
Query:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL
        SVF+RPF   FL FCFERF+V IWSSR    L+ ++  +M++    LLFC+DQ+ CTTT+F T E   KPL LK+L ++W+++   +   K  YD +NTL
Subjt:  SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTL

Query:  LLDDSPYKALRNP
        L+DDSP KAL NP
Subjt:  LLDDSPYKALRNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAGTATTTAAGAGGCCCTTCTGTGACGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCGAGAACCTGGAAGAACCTGAACATGTTAGTTAG
GTTTCTTATGAGAGACTCCAGACACAAACTACTTTTCTGCTGGGATCAATCGCACTGTACAACTACAAGGTTCACCACTATTGAGAACAATAAGAAGCCCCTTCTTTTGA
AAGAACTGAATAAAATATGGGAAAATTTGCAACCTAATCTTCCATGGAAAAAGGGGGATTATGATGCATCAAATACATTATTGTTGGATGATTCCCCATACAAGGCCTTG
CGCAATCCA
mRNA sequenceShow/hide mRNA sequence
TCAGTATTTAAGAGGCCCTTCTGTGACGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCGAGAACCTGGAAGAACCTGAACATGTTAGTTAG
GTTTCTTATGAGAGACTCCAGACACAAACTACTTTTCTGCTGGGATCAATCGCACTGTACAACTACAAGGTTCACCACTATTGAGAACAATAAGAAGCCCCTTCTTTTGA
AAGAACTGAATAAAATATGGGAAAATTTGCAACCTAATCTTCCATGGAAAAAGGGGGATTATGATGCATCAAATACATTATTGTTGGATGATTCCCCATACAAGGCCTTG
CGCAATCCA
Protein sequenceShow/hide protein sequence
SVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVRFLMRDSRHKLLFCWDQSHCTTTRFTTIENNKKPLLLKELNKIWENLQPNLPWKKGDYDASNTLLLDDSPYKAL
RNP