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MS002063 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002063
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold30:2150182..2150388
RNA-Seq ExpressionMS002063
SyntenyMS002063
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON36160.1 43kDa postsynaptic protein [Parasponia andersonii]2.6e-1862.5Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVV+NLPSVVL   ++   +ALC++C D I VGE AKQLPC H +HG+CI PWL I +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

PON84354.1 43kDa postsynaptic protein [Trema orientale]2.6e-1862.5Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVV+NLPSVVL   ++   +ALC++C D I VGE AKQLPC H +HG+CI PWL I +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

XP_010087330.1 uncharacterized protein LOC21395864 [Morus notabilis]9.1e-1961.11Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PAS+TVV+NLPSVVL   ++   +ALC++C D + VGE+AKQLPC H +HG+CI PWL I +T P+CRHELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

XP_022134761.1 E3 ubiquitin-protein ligase SIRP1-like [Momordica charantia]1.9e-3297.1Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGEC RPWLEITDT PLCRHELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

XP_024973313.1 uncharacterized protein LOC112511781 [Cynara cardunculus var. scolymus]5.9e-1862.5Show/hide
Query:  PASRTVVQNLPSVV---LNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA+RTVV+NL SVV   L+L + DALC++C D I VG   KQLPCGH +HG+CI PWL I +T P+CRHELP
Subjt:  PASRTVVQNLPSVV---LNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

TrEMBL top hitse value%identityAlignment
A0A103XX49 Zinc finger, RING/FYVE/PHD-type2.9e-1862.5Show/hide
Query:  PASRTVVQNLPSVV---LNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA+RTVV+NL SVV   L+L + DALC++C D I VG   KQLPCGH +HG+CI PWL I +T P+CRHELP
Subjt:  PASRTVVQNLPSVV---LNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

A0A2P5AI19 43kDa postsynaptic protein1.3e-1862.5Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVV+NLPSVVL   ++   +ALC++C D I VGE AKQLPC H +HG+CI PWL I +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

A0A2P5EFQ9 43kDa postsynaptic protein1.3e-1862.5Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVV+NLPSVVL   ++   +ALC++C D I VGE AKQLPC H +HG+CI PWL I +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

A0A6J1BYP6 E3 ubiquitin-protein ligase SIRP1-like9.1e-3397.1Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGEC RPWLEITDT PLCRHELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

W9QD04 E3 ubiquitin-protein ligase RING14.4e-1961.11Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PAS+TVV+NLPSVVL   ++   +ALC++C D + VGE+AKQLPC H +HG+CI PWL I +T P+CRHELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING12.2e-1547.22Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PAS++ ++ LP V +   NL+ E   C++CMD    G EAKQ+PC H +H +C+ PWLE+ ++ P+CRHELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

Q3T0W3 E3 ubiquitin-protein ligase RNF1811.8e-1446.38Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA++T V+NLP  V+  S+ +  C +C+      E A ++PC H FH  CI PWL  T++ PLCRHELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

Q5M974 E3 ubiquitin-protein ligase RNF1812.4e-1447.89Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDAL--CSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA++ VV++LP V +   + DA   C +C+     GE  +QLPC H FH  CI PWL  T++ PLCRHELP
Subjt:  PASRTVVQNLPSVVLNLSEEDAL--CSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

Q6AVN2 E3 ubiquitin-protein ligase SIRP13.7e-1549.28Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA +  V+ LP+V +   EE   CS+C+D + VG +AKQ+PC H FH  CI PWLE+  + P+CR ELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

Q6GPV5 E3 ubiquitin-protein ligase RNF1811.4e-1449.3Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDAL--CSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PAS+ VV++LP V +   + DA   C +C+     GE  +QLPC H FH  CI PWL  T++ PLCRHELP
Subjt:  PASRTVVQNLPSVVLNLSEEDAL--CSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

Arabidopsis top hitse value%identityAlignment
AT3G02340.1 RING/U-box superfamily protein6.9e-1748.61Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDA---LCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA+++V+Q+LP V L + E D    +C++C D + V E+ ++LPC H +HGECI PWL I +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVLNLSEEDA---LCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

AT4G26400.1 RING/U-box superfamily protein5.9e-1650.72Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA + VV NLP+V ++   E   CSIC+D    G EAK++PC H FH  CI PWLE+  + P+CR+ELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

AT4G26400.2 RING/U-box superfamily protein5.9e-1650.72Show/hide
Query:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PA + VV NLP+V ++   E   CSIC+D    G EAK++PC H FH  CI PWLE+  + P+CR+ELP
Subjt:  PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

AT5G08139.1 RING/U-box superfamily protein1.5e-1644.44Show/hide
Query:  PASRTVVQNLPSVVLNLSEED---ALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        P S++ + NLP V+L    +D    +C++C D + +G +A QLPC H +H ECI PWL++ +T P+CR+ELP
Subjt:  PASRTVVQNLPSVVLNLSEED---ALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP

AT5G15820.1 RING/U-box superfamily protein3.1e-1752.78Show/hide
Query:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP
        PAS++VV  LP V L    LS    +C+IC D +   E+ K+LPC H +HGECI PWL I +T P+CRHELP
Subjt:  PASRTVVQNLPSVVL---NLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTGCATCAAGAACAGTGGTTCAGAATCTTCCGTCGGTGGTTCTGAATCTGAGTGAAGAAGATGCATTGTGTTCGATCTGTATGGATCGGATCAGAGTTGGTGAAGAAGC
GAAGCAGTTACCGTGTGGCCATGGATTTCATGGTGAGTGTATAAGGCCATGGTTGGAGATTACTGATACTTGGCCTCTTTGCCGCCATGAATTGCCT
mRNA sequenceShow/hide mRNA sequence
CCTGCATCAAGAACAGTGGTTCAGAATCTTCCGTCGGTGGTTCTGAATCTGAGTGAAGAAGATGCATTGTGTTCGATCTGTATGGATCGGATCAGAGTTGGTGAAGAAGC
GAAGCAGTTACCGTGTGGCCATGGATTTCATGGTGAGTGTATAAGGCCATGGTTGGAGATTACTGATACTTGGCCTCTTTGCCGCCATGAATTGCCT
Protein sequenceShow/hide protein sequence
PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP