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MS002064 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002064
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold30:2152457..2152660
RNA-Seq ExpressionMS002064
SyntenyMS002064
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5957742.1 hypothetical protein HYC85_004967 [Camellia sinensis]2.0e-1860.27Show/hide
Query:  ASRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS+TV+E+LLSVV  +ED     V+C++C + + IGE+AK+LPC HRYHG CI  WL I+NTCP+CRYELP D
Subjt:  ASRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

RXH96482.1 hypothetical protein DVH24_008986 [Malus domestica]4.4e-1861.64Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+  V+ESL SVVL +EDV     VC++C + MK GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

TQD72162.1 hypothetical protein C1H46_042302 [Malus baccata]4.4e-1861.64Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+  V+ESL SVVL +EDV     VC++C + MK GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

XP_008374682.1 uncharacterized protein LOC103437931 [Malus domestica]4.4e-1861.64Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+  V+ESL SVVL +EDV     VC++C + MK GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

XP_022135108.1 E3 ubiquitin-protein ligase AIP2-like [Momordica charantia]1.1e-32100Show/hide
Query:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
Subjt:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

TrEMBL top hitse value%identityAlignment
A0A498JSG0 Uncharacterized protein2.2e-1861.64Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+  V+ESL SVVL +EDV     VC++C + MK GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

A0A540KDX4 RING-type domain-containing protein2.2e-1861.64Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+  V+ESL SVVL +EDV     VC++C + MK GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

A0A6J1C3W1 E3 ubiquitin-protein ligase AIP2-like5.3e-33100Show/hide
Query:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
Subjt:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

A0A7J7HY22 RING-type domain-containing protein9.7e-1960.27Show/hide
Query:  ASRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS+TV+E+LLSVV  +ED     V+C++C + + IGE+AK+LPC HRYHG CI  WL I+NTCP+CRYELP D
Subjt:  ASRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

W9QD04 E3 ubiquitin-protein ligase RING12.8e-1860.27Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS+TV+E+L SVVL +EDV     +C++C + M +GE+AKQLPC HRYHG CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING14.5e-1343.84Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS++ IE+L  V + + ++      C++CM+  + G EAKQ+PC H YH  C+  WLE+ N+CP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

Q6AVN2 E3 ubiquitin-protein ligase SIRP11.1e-1444.12Show/hide
Query:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A +  +E+L +V + EE V CS+C++ +++G +AKQ+PC H++H  CI  WLE+ ++CP+CR+ELP +
Subjt:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.3e-1241.1Show/hide
Query:  ASRTVIESLLSV-----VLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS++ I++L +V     +L+ E   C++CM+  + G + KQ+PC H +H  C+  WLE+ N+CP+CR+ELP D
Subjt:  ASRTVIESLLSV-----VLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

Q9LQX2 E3 ubiquitin-protein ligase MPSR11.7e-1244.12Show/hide
Query:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS+  I+++  V +   +  C IC+E  K  E  K++PC HR+HGGCI  WL    +CP+CRYE+P D
Subjt:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

Q9SNB6 E3 ubiquitin-protein ligase RDUF15.8e-1343.06Show/hide
Query:  ASRTVIESLLSVVLRE----EDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS++ IESL  V + +     +  C++C E  + G E +++PC H +HG CI  WL I+N+CP+CR+ELP D
Subjt:  ASRTVIESLLSVVLRE----EDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

Arabidopsis top hitse value%identityAlignment
AT1G55530.1 RING/U-box superfamily protein1.3e-1544.12Show/hide
Query:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A +  +E+L +V + EE + CS+C++  +IG EAK +PC H++H  C+  WLE+ ++CP+CRY+LP D
Subjt:  ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

AT1G68180.1 RING/U-box superfamily protein1.5e-1649.28Show/hide
Query:  ASRTVIESLLSVVLREEDV----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYEL
        AS++ IE++ +V++ +ED+    VC+IC E  ++GEE K+L C+H YH  CI +WL I NTCPICR+E+
Subjt:  ASRTVIESLLSVVLREEDV----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYEL

AT3G02340.1 RING/U-box superfamily protein1.3e-1547.95Show/hide
Query:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        A+++VI+ L  V L  E++     VC++C + M + E+ ++LPC H YHG CI  WL I+NTCP+CRYELP D
Subjt:  ASRTVIESLLSVVLREEDV-----VCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

AT5G08139.1 RING/U-box superfamily protein4.4e-1647.22Show/hide
Query:  SRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        S++ + +L  V+L  E+     +VC++C + M IG +A QLPC H+YH  CI  WL+++NTCP+CRYELP D
Subjt:  SRTVIESLLSVVLREED-----VVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD

AT5G60820.1 RING/U-box superfamily protein1.7e-1546.05Show/hide
Query:  ASRTVIESLLSVVLREEDVV--------CSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD
        AS++ I++L    L  EDV+        C++C E M +G+E  +LPC H+YH  CI  WL I+NTCP+CR+ELP D
Subjt:  ASRTVIESLLSVVLREEDVV--------CSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATCAAGAACAGTGATCGAGAGCCTTCTGTCGGTGGTTTTGAGAGAAGAAGATGTGGTTTGTTCGATTTGTATGGAATGGATGAAAATTGGAGAAGAAGCCAAACAGTT
GCCCTGTATCCACAGGTATCATGGTGGATGTATTAGGGCATGGTTGGAAATTAAAAATACATGTCCAATTTGCCGCTACGAACTGCCTAAAGAT
mRNA sequenceShow/hide mRNA sequence
GCATCAAGAACAGTGATCGAGAGCCTTCTGTCGGTGGTTTTGAGAGAAGAAGATGTGGTTTGTTCGATTTGTATGGAATGGATGAAAATTGGAGAAGAAGCCAAACAGTT
GCCCTGTATCCACAGGTATCATGGTGGATGTATTAGGGCATGGTTGGAAATTAAAAATACATGTCCAATTTGCCGCTACGAACTGCCTAAAGAT
Protein sequenceShow/hide protein sequence
ASRTVIESLLSVVLREEDVVCSICMEWMKIGEEAKQLPCIHRYHGGCIRAWLEIKNTCPICRYELPKD