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MS002069 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002069
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSOB five-like 2
Genome locationscaffold30:2188923..2189390
RNA-Seq ExpressionMS002069
SyntenyMS002069
Gene Ontology termsGO:0009691 - cytokinin biosynthetic process (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
InterPro domainsIPR044670 - SOB-five-Like (SOFL) family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589579.1 hypothetical protein SDJN03_15002, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3361.82Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---
        MEPSQ+FGV+EECHSSESGWTMYIGSPA     +D D   + D+ EDE E +  Y  NQD+SDDSMASDASSGPSHQ   HPFGG   +KNP PH L   
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---

Query:  -KQQSEVKFCFET----KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
           Q++   CF+T    K KKPL +KQRAERKEVKE        PK+SVQSSSK RKSIWMGK+N
Subjt:  -KQQSEVKFCFET----KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

XP_022135291.1 uncharacterized protein LOC111007289 isoform X1 [Momordica charantia]8.2e-7699.36Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
        MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPS DDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS

Query:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
        EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
Subjt:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

XP_022135292.1 uncharacterized protein LOC111007289 isoform X2 [Momordica charantia]5.2e-7098.64Show/hide
Query:  AEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK
        +EECHSSESGWTMYIGSPAGGSSDADADAAPS DDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK
Subjt:  AEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK

Query:  TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
        TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
Subjt:  TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

XP_022974149.1 uncharacterized protein LOC111472737 [Cucurbita maxima]3.0e-3360.9Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
        ME SQ  GV+EECHSSESGWTMYIGSP   SSD D      +DD  +  +++  + N+QD+SDDSMASDASSGPSHQ  HPF G+G +K+          
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS

Query:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
                  +KPLMEK RAERKEVK+KLVLVGQKPK+SVQSSSKVRKSIWMGK+N
Subjt:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

XP_038879181.1 protein SOB FIVE-LIKE 3-like [Benincasa hispida]3.9e-3365.84Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYG-NNQDES-DDSMASDASSGPS-HQVGHPFGGNGRVKNPNPHGLK
        MEPSQIFGV+EECHSSESGWTMYIGSP  GSSDA      + DD EDE+     Y  NNQD+S DDSMASDASSGP+ HQ G+ F G   +K+PN     
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYG-NNQDES-DDSMASDASSGPS-HQVGHPFGGNGRVKNPNPHGLK

Query:  QQSEVKFCFETKTKKPLME--KQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
           E+ FC ETKTKKPLME  KQRAE+KEVK     VGQKPK+SVQSSSKVRKSI MGK+N
Subjt:  QQSEVKFCFETKTKKPLME--KQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

TrEMBL top hitse value%identityAlignment
A0A6J1C092 uncharacterized protein LOC111007289 isoform X14.0e-7699.36Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
        MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPS DDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS

Query:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
        EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
Subjt:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

A0A6J1C2A7 uncharacterized protein LOC111007289 isoform X22.5e-7098.64Show/hide
Query:  AEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK
        +EECHSSESGWTMYIGSPAGGSSDADADAAPS DDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK
Subjt:  AEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETK

Query:  TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
        TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
Subjt:  TKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

A0A6J1E0K4 uncharacterized protein LOC111429737 isoform X31.9e-3361.08Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---
        MEPSQ+FGV+EECHSSESGWTMYIGSPA     +D D   + D+ EDE E +  Y  NQD+SDDSMASDASSGPSHQ   HPFGG   +KNP PH L   
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---

Query:  -KQQSEVKFCFET------KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
           Q++   CFET      K KKPL +KQRAERKEVKE        PK+SVQSSSK RK IWMGK+N
Subjt:  -KQQSEVKFCFET------KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

A0A6J1E405 uncharacterized protein LOC111429737 isoform X11.9e-3361.08Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---
        MEPSQ+FGV+EECHSSESGWTMYIGSPA     +D D   + D+ EDE E +  Y  NQD+SDDSMASDASSGPSHQ   HPFGG   +KNP PH L   
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQV-GHPFGGNGRVKNPNPHGL---

Query:  -KQQSEVKFCFET------KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
           Q++   CFET      K KKPL +KQRAERKEVKE        PK+SVQSSSK RK IWMGK+N
Subjt:  -KQQSEVKFCFET------KTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

A0A6J1IGR2 uncharacterized protein LOC1114727371.4e-3360.9Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS
        ME SQ  GV+EECHSSESGWTMYIGSP   SSD D      +DD  +  +++  + N+QD+SDDSMASDASSGPSHQ  HPF G+G +K+          
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQS

Query:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN
                  +KPLMEK RAERKEVK+KLVLVGQKPK+SVQSSSKVRKSIWMGK+N
Subjt:  EVKFCFETKTKKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN

SwissProt top hitse value%identityAlignment
Q9CA45 Protein SOB FIVE-LIKE 22.1e-0538.94Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDD-----------DGEDEDEDEDCYGNNQDESDDSMASDASSGPS-HQVGHPFGGNGRV
        ME  +I G AEE  S ESGWTMYI     G+  ++      DD           DG+++D+D+D   ++ +ESDDSM SDASS PS HQ       +   
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDD-----------DGEDEDEDEDCYGNNQDESDDSMASDASSGPS-HQVGHPFGGNGRV

Query:  KNPNPHGLKQQSE
        KN N   +  Q+E
Subjt:  KNPNPHGLKQQSE

Q9LEZ1 Protein SUPPRESSOR OF PHYTOCHROME B 52.1e-0550Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGP
        ME + IFG  E+C S ESGWTMY+ S    S D D D    DDD E+ED D            DSM SDASSGP
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGP

Arabidopsis top hitse value%identityAlignment
AT1G68870.1 SOB five-like 21.5e-0638.94Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDD-----------DGEDEDEDEDCYGNNQDESDDSMASDASSGPS-HQVGHPFGGNGRV
        ME  +I G AEE  S ESGWTMYI     G+  ++      DD           DG+++D+D+D   ++ +ESDDSM SDASS PS HQ       +   
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDD-----------DGEDEDEDEDCYGNNQDESDDSMASDASSGPS-HQVGHPFGGNGRV

Query:  KNPNPHGLKQQSE
        KN N   +  Q+E
Subjt:  KNPNPHGLKQQSE

AT5G08150.1 suppressor of phytochrome b 51.5e-0650Show/hide
Query:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGP
        ME + IFG  E+C S ESGWTMY+ S    S D D D    DDD E+ED D            DSM SDASSGP
Subjt:  MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTTCCCAAATTTTTGGAGTTGCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCAGGTGGGTCTAGTGATGCTGATGCTGA
TGCTGCACCTTCTGATGATGATGGAGAAGATGAAGATGAAGATGAAGATTGCTATGGAAATAACCAAGATGAGAGTGATGATTCCATGGCTTCTGATGCTTCTTCAGGCC
CAAGCCATCAAGTGGGGCACCCATTTGGAGGAAATGGGAGGGTGAAGAATCCCAATCCCCATGGCTTGAAGCAACAGAGTGAGGTCAAGTTTTGCTTTGAAACCAAAACC
AAGAAGCCATTAATGGAGAAGCAGAGAGCTGAGAGGAAGGAAGTGAAAGAGAAGTTGGTTTTGGTTGGCCAAAAGCCAAAGACTTCAGTTCAGAGCAGTTCAAAGGTGAG
AAAGAGCATCTGGATGGGCAAAAAAAAC
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTTCCCAAATTTTTGGAGTTGCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCAGGTGGGTCTAGTGATGCTGATGCTGA
TGCTGCACCTTCTGATGATGATGGAGAAGATGAAGATGAAGATGAAGATTGCTATGGAAATAACCAAGATGAGAGTGATGATTCCATGGCTTCTGATGCTTCTTCAGGCC
CAAGCCATCAAGTGGGGCACCCATTTGGAGGAAATGGGAGGGTGAAGAATCCCAATCCCCATGGCTTGAAGCAACAGAGTGAGGTCAAGTTTTGCTTTGAAACCAAAACC
AAGAAGCCATTAATGGAGAAGCAGAGAGCTGAGAGGAAGGAAGTGAAAGAGAAGTTGGTTTTGGTTGGCCAAAAGCCAAAGACTTCAGTTCAGAGCAGTTCAAAGGTGAG
AAAGAGCATCTGGATGGGCAAAAAAAAC
Protein sequenceShow/hide protein sequence
MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSDDDGEDEDEDEDCYGNNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKT
KKPLMEKQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN