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MS002097 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002097
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold30:2342089..2342526
RNA-Seq ExpressionMS002097
SyntenyMS002097
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN63795.1 hypothetical protein Csa_013677 [Cucumis sativus]4.7e-4162.89Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQAS-----PSPRSPLARPKHMLKTISQSAITLVHKKKS-KP--QKDHDEE
        M FST +  PT DSG  AK+PSTGL  S+ AL       AA L++KL+ K +      PSPRSPLARPK MLKTISQSA++LVHKK++ +P  +++ +EE
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQAS-----PSPRSPLARPKHMLKTISQSAITLVHKKKS-KP--QKDHDEE

Query:  EEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT
        EE+WG GGVWQR ILMGDKCQPLDFSGAIYYD+ G KMD+ P RSPRASPLP YLL K+
Subjt:  EEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT

TYK28394.1 hypothetical protein E5676_scaffold629G00220 [Cucumis melo var. makuwa]1.6e-4163.75Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK--QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEE---
        M FST E  PT  SG +A +PSTGL  S+TAL       AA L++KL++K  Q  PSPRSPLARPK MLKTISQSA+ LVHKK++  Q++ +EEEEE   
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK--QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEE---

Query:  ----WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT
            WG GGVWQR ILMGDKCQPLDFSGAIYYD+ G+KMD+ P RSPRASPLP YLL K+
Subjt:  ----WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT

XP_022135410.1 uncharacterized protein LOC111007369 [Momordica charantia]9.4e-74100Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL
        MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL

Query:  MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT
        MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT
Subjt:  MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT

XP_023531310.1 uncharacterized protein LOC111793589 [Cucurbita pepo subsp. pepo]1.8e-3255.48Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE
        M  ST ER P  +S     S  TGLL S+  L       AA +++KL+ K   PSP + LARPK+MLKT+S SA+TL  KKK+     +P+++ DEEE+E
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE

Query:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK
        WG  GVWQR ILMGDKCQPLDF G IYYD+ GNK+++ P RSPRASPLP YLL K
Subjt:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK

XP_038879173.1 uncharacterized protein LOC120071149 [Benincasa hispida]6.8e-4063.46Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK-----QASPSPRSPLARPKHMLKTISQSAITLVHKKKS-KPQKDHDEEEE
        M FST E   TADS  AAK+PSTGL  S+TAL       AA +++KL+ K      + PSP+SPLA PK MLKTISQSA++LV KKK+ + +++ DEEEE
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK-----QASPSPRSPLARPKHMLKTISQSAITLVHKKKS-KPQKDHDEEEE

Query:  EWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK
        EWG GGVWQR ILMGDKCQPL+FSGAIYYD+ GNKM++ P RSPRASPLP YLL K
Subjt:  EWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK

TrEMBL top hitse value%identityAlignment
A0A0A0LPH9 Uncharacterized protein2.3e-4162.89Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQAS-----PSPRSPLARPKHMLKTISQSAITLVHKKKS-KP--QKDHDEE
        M FST +  PT DSG  AK+PSTGL  S+ AL       AA L++KL+ K +      PSPRSPLARPK MLKTISQSA++LVHKK++ +P  +++ +EE
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQAS-----PSPRSPLARPKHMLKTISQSAITLVHKKKS-KP--QKDHDEE

Query:  EEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT
        EE+WG GGVWQR ILMGDKCQPLDFSGAIYYD+ G KMD+ P RSPRASPLP YLL K+
Subjt:  EEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT

A0A5D3DXW4 Uncharacterized protein7.8e-4263.75Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK--QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEE---
        M FST E  PT  SG +A +PSTGL  S+TAL       AA L++KL++K  Q  PSPRSPLARPK MLKTISQSA+ LVHKK++  Q++ +EEEEE   
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTK--QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEE---

Query:  ----WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT
            WG GGVWQR ILMGDKCQPLDFSGAIYYD+ G+KMD+ P RSPRASPLP YLL K+
Subjt:  ----WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKT

A0A6J1C108 uncharacterized protein LOC1110073694.5e-74100Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL
        MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAIL

Query:  MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT
        MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT
Subjt:  MGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT

A0A6J1EZ09 uncharacterized protein LOC1114408463.3e-3255.48Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE
        M  ST ER P A+S        TGLL S+  L       AA +++KL+ K   PSP + LARPK++LKT+S SA+TL  KKK+     +P+ D DEEE+E
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE

Query:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK
        WG  GVWQR ILMGDKCQPLDF G IYYD+ GNK+++ P RSPRASPLP YLL K
Subjt:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK

A0A6J1I8S7 uncharacterized protein LOC1114725191.1e-3256.13Show/hide
Query:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE
        M   T ER P A+S     S  TGLL S+  L       AA +++KL+ K   PSP + LARPK MLKTIS SA+TL  KKK+     +P+++ DEEE+E
Subjt:  MGFSTAERVPTADSGAAAKSPSTGLLASITAL-------AARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKS-----KPQKDHDEEEEE

Query:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK
        WG  GVWQR ILMGDKCQPLDF G IYYD+ GNK+++ P RSPRASPLP YLL K
Subjt:  WGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein2.4e-1940.52Show/hide
Query:  PTADSGAAAKSPSTGLLASITALAA----RLSRKLRTK-------------------QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEE
        P  +S  + K  S   L S+  L A    RLS+KL+ K                     S S  SP  RPK +  T+S  A+T+V +K    +K    EE
Subjt:  PTADSGAAAKSPSTGLLASITALAA----RLSRKLRTK-------------------QASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEE

Query:  EEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAY
        E     G+WQR ILMG KC+PLDFSG IYYD+ G  ++++PPRSPR +PLP+Y
Subjt:  EEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLPAY

AT1G71740.1 unknown protein2.9e-0448.89Show/hide
Query:  GGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPL
        G +WQ+ ILMG KCQ  DFSG I YD  G    Q+ P +  + PL
Subjt:  GGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPL

AT3G14760.1 unknown protein6.4e-0460.71Show/hide
Query:  VWQRAILMGDKCQPLDFSGAIYYDNYGN
        VWQR ILMG+KC+   FSG I YD  G+
Subjt:  VWQRAILMGDKCQPLDFSGAIYYDNYGN

AT3G18560.1 unknown protein3.0e-1747.96Show/hide
Query:  SPL-ARPKHMLKTISQSAITLVHK----------KKSKPQKDHDEEEEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLP
        SP+  RPK +  T+S  A+T+V +          KK+  +   +E+EEE+   GVWQR ILMG KC+PLD+SG IYYD  G+++ Q+PPRSPRAS +P
Subjt:  SPL-ARPKHMLKTISQSAITLVHK----------KKSKPQKDHDEEEEEWGHGGVWQRAILMGDKCQPLDFSGAIYYDNYGNKMDQLPPRSPRASPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTCTCGACGGCGGAGCGCGTTCCCACGGCCGACTCCGGCGCGGCGGCGAAGAGCCCATCCACAGGCCTGCTGGCCTCCATTACAGCTCTCGCGGCTCGGCTTAG
CAGGAAGCTGAGGACCAAGCAGGCGAGTCCGAGCCCCAGGTCGCCGCTGGCTCGGCCCAAGCACATGCTGAAGACCATCAGCCAATCCGCCATCACTTTGGTCCACAAGA
AAAAGAGCAAGCCCCAGAAGGACCATGACGAAGAAGAAGAAGAGTGGGGACACGGCGGTGTCTGGCAGAGGGCCATCTTGATGGGCGACAAATGCCAGCCCTTGGATTTC
TCCGGTGCAATTTACTACGATAATTACGGCAACAAGATGGACCAATTGCCTCCCCGTTCGCCACGTGCCAGTCCTTTACCCGCTTATCTCCTCGCAAAAACTGCAACC
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTCTCGACGGCGGAGCGCGTTCCCACGGCCGACTCCGGCGCGGCGGCGAAGAGCCCATCCACAGGCCTGCTGGCCTCCATTACAGCTCTCGCGGCTCGGCTTAG
CAGGAAGCTGAGGACCAAGCAGGCGAGTCCGAGCCCCAGGTCGCCGCTGGCTCGGCCCAAGCACATGCTGAAGACCATCAGCCAATCCGCCATCACTTTGGTCCACAAGA
AAAAGAGCAAGCCCCAGAAGGACCATGACGAAGAAGAAGAAGAGTGGGGACACGGCGGTGTCTGGCAGAGGGCCATCTTGATGGGCGACAAATGCCAGCCCTTGGATTTC
TCCGGTGCAATTTACTACGATAATTACGGCAACAAGATGGACCAATTGCCTCCCCGTTCGCCACGTGCCAGTCCTTTACCCGCTTATCTCCTCGCAAAAACTGCAACC
Protein sequenceShow/hide protein sequence
MGFSTAERVPTADSGAAAKSPSTGLLASITALAARLSRKLRTKQASPSPRSPLARPKHMLKTISQSAITLVHKKKSKPQKDHDEEEEEWGHGGVWQRAILMGDKCQPLDF
SGAIYYDNYGNKMDQLPPRSPRASPLPAYLLAKTAT