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MS002204 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002204
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold30:3207985..3208173
RNA-Seq ExpressionMS002204
SyntenyMS002204
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERN02875.1 hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]5.4e-2693.65Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
KAF3433879.1 hypothetical protein FNV43_RR24982 [Rhamnella rubrinervis]1.2e-2593.65Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKIT+RF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
KAG6735386.1 hypothetical protein POTOM_062012 [Populus tomentosa]5.4e-2695.24Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
TKS04885.1 ribosomal protein S4 [Populus alba]5.4e-2695.24Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
YP_009758243.1 hypothetical chloroplast RF34 [Rubus amabilis]5.4e-2692.06Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
TrEMBL top hitse value%identityAlignment
A0A4U5Q996 30S ribosomal protein S4, chloroplastic2.6e-2695.24Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A6G8QRP2 Photosystem I assembly protein Ycf32.6e-2692.06Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A7J6HQR9 Uncharacterized protein2.6e-2693.65Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A7T7D536 Hypothetical chloroplast RF342.6e-2692.06Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
W1P7C5 Uncharacterized protein2.6e-2693.65Show/hide
Query:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
SwissProt top hitse value%identityAlignment
A0ZZ36 Photosystem I assembly protein Ycf36.4e-2296Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q2L906 Photosystem I assembly protein Ycf36.4e-2296Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q49KZ7 Photosystem I assembly protein Ycf36.4e-2296Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q4VZH4 Photosystem I assembly protein Ycf35.8e-23100Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q9MTP0 Photosystem I assembly protein Ycf36.4e-2296Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.4e-2188Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL ITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTA
TTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAA
mRNA sequenceShow/hide mRNA sequence
TACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTA
TTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAA
Protein sequenceShow/hide protein sequence
YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK