; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002216 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002216
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptiontRNA-specific adenosine deaminase 2
Genome locationscaffold30:3299144..3307415
RNA-Seq ExpressionMS002216
SyntenyMS002216
Gene Ontology termsGO:0002100 - tRNA wobble adenosine to inosine editing (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0052717 - tRNA-specific adenosine-34 deaminase activity (molecular function)
InterPro domainsIPR002125 - Cytidine and deoxycytidylate deaminase domain
IPR016192 - APOBEC/CMP deaminase, zinc-binding
IPR016193 - Cytidine deaminase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021699.1 tRNA-specific adenosine deaminase 2 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVA+K SKCKLYVTCEPCIMCASALSILGI EVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EAHTSGNRQGRGFKCTAG MASEAVALFRSFYEQGNPNAP PHRPLVH++AGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

XP_004146335.1 tRNA-specific adenosine deaminase TAD2 [Cucumis sativus]3.0e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

XP_008453556.1 PREDICTED: tRNA-specific adenosine deaminase 2 isoform X4 [Cucumis melo]3.0e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

XP_022135334.1 tRNA-specific adenosine deaminase 2 [Momordica charantia]4.3e-85100Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

XP_023530916.1 tRNA-specific adenosine deaminase 2-like [Cucurbita pepo subsp. pepo]1.0e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVA+K SKCKLYVTCEPCIMCASALSILGI EVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EAHTSGN QGRGFKCTAG MASEAVALFRSFYEQGNPNAP PHRPLVHH+AGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

TrEMBL top hitse value%identityAlignment
A0A0A0LZX4 CMP/dCMP-type deaminase domain-containing protein1.5e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

A0A1S3BVZ1 tRNA-specific adenosine deaminase 2 isoform X41.5e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

A0A1S4DZL9 tRNA-specific adenosine deaminase 2 isoform X21.5e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

A0A5D3DXI1 tRNA-specific adenosine deaminase 2 isoform X41.5e-7894.23Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPCIMCASALSI+GIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GS EA TSGN  GRGFKCTAG MASEAV LFRSFYEQGNPNAPKPHRPLV+HQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

A0A6J1C158 tRNA-specific adenosine deaminase 22.1e-85100Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
        GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ

SwissProt top hitse value%identityAlignment
Q5E9J7 tRNA-specific adenosine deaminase 21.1e-3048.61Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        C++V +  V+  GRN   +T+NATRHAEM AID  ++  +R G S SEV   F    LYVT EPCIMCA+AL ++ I  V YGC N++FGGCGS+L +  
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK
            A       G+ F+CT G  A EAV + ++FY+Q NPNAPK
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK

Q5RIV4 tRNA-specific adenosine deaminase 27.1e-3048.65Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSL--
        C++V +  +I  GRN   ET+NATRHAEM A+D +++ W R  L   +  +   +  LYVT EPCIMCA+AL +L I  V YGC N++FGGCGS+L +  
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSL--

Query:  -HLGSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKP
         HL     HT     G  FKC AG  A EAV + ++FY+Q NPNAPKP
Subjt:  -HLGSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKP

Q6IDB6 tRNA-specific adenosine deaminase TAD28.3e-6375.16Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CV +EDG VIA+GRNRT ETRNATRHAEMEAID L+  W++DGLS S+VA+KFSKC LYVTCEPCIMCASALS LGIKEVYYGC NDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQ
        GS EA     ++G+G+KC  G MA EAV+LF+ FYEQGNPNAPKPHRP+V  +
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQ

Q6P6J0 tRNA-specific adenosine deaminase 21.2e-2947.92Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        C++V +  V+  GRN   +T+NATRHAEM AID +++   + G S S V   F    LYVT EPCIMCA+AL ++ I  V YGC N++FGGCGS+L++  
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK
            A       GR F+C  G  A EAV L ++FY+Q NPNAPK
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK

Q7Z6V5 tRNA-specific adenosine deaminase 21.4e-3047.92Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        C++V +  V+  GRN   +T+NATRHAEM AID +++  ++ G S SEV   F    LYVT EPCIMCA+AL ++ I  V YGC N++FGGCGS+L++  
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK
            A       GR F+C  G  A EAV + ++FY+Q NPNAPK
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPK

Arabidopsis top hitse value%identityAlignment
AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein5.9e-6475.16Show/hide
Query:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL
        CV +EDG VIA+GRNRT ETRNATRHAEMEAID L+  W++DGLS S+VA+KFSKC LYVTCEPCIMCASALS LGIKEVYYGC NDKFGGCGSILSLHL
Subjt:  CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHL

Query:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQ
        GS EA     ++G+G+KC  G MA EAV+LF+ FYEQGNPNAPKPHRP+V  +
Subjt:  GSCEAHTSGNRQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQ

AT1G68720.1 tRNA arginine adenosine deaminase2.1e-0837Show/hide
Query:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHLG
        V+V DG +IA G N   E R++T HAEM  I        R+G S +  + + +   LYVT EPC MCA A+    +  + +G  N   G  GS + L  G
Subjt:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHLG

AT5G28050.1 Cytidine/deoxycytidylate deaminase family protein5.6e-0636.59Show/hide
Query:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG
        VIV +  V+A+  N   +  + T HAE+ AI    EA K+  L+  E+    S+C++Y +CEPC MC  A+ +  +K + YG
Subjt:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG

AT5G28050.2 Cytidine/deoxycytidylate deaminase family protein5.6e-0636.59Show/hide
Query:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG
        VIV +  V+A+  N   +  + T HAE+ AI    EA K+  L+  E+    S+C++Y +CEPC MC  A+ +  +K + YG
Subjt:  VIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGTGATTGTTGAAGATGGGATGGTCATTGCCACAGGAAGAAATCGCACCACTGAGACCCGAAATGCTACCCGACATGCGGAGATGGAAGCTATTGACATTTTGATTGA
GGCATGGAAGAGGGACGGGCTTTCAACCTCAGAAGTTGCCGACAAGTTCTCGAAGTGCAAGCTTTATGTTACCTGTGAACCGTGCATTATGTGCGCTTCAGCCCTATCAA
TACTTGGTATAAAGGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTGGGTAGCTGCGAGGCACATACAAGTGGCAAT
CGGCAAGGAAGGGGGTTCAAATGCACTGCAGGAACAATGGCGTCAGAAGCAGTGGCTCTTTTTCGAAGTTTTTACGAACAGGGGAATCCTAATGCTCCAAAACCTCACAG
GCCACTAGTTCACCATCAAGCTGGTCAA
mRNA sequenceShow/hide mRNA sequence
TGTGTGATTGTTGAAGATGGGATGGTCATTGCCACAGGAAGAAATCGCACCACTGAGACCCGAAATGCTACCCGACATGCGGAGATGGAAGCTATTGACATTTTGATTGA
GGCATGGAAGAGGGACGGGCTTTCAACCTCAGAAGTTGCCGACAAGTTCTCGAAGTGCAAGCTTTATGTTACCTGTGAACCGTGCATTATGTGCGCTTCAGCCCTATCAA
TACTTGGTATAAAGGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTGGGTAGCTGCGAGGCACATACAAGTGGCAAT
CGGCAAGGAAGGGGGTTCAAATGCACTGCAGGAACAATGGCGTCAGAAGCAGTGGCTCTTTTTCGAAGTTTTTACGAACAGGGGAATCCTAATGCTCCAAAACCTCACAG
GCCACTAGTTCACCATCAAGCTGGTCAA
Protein sequenceShow/hide protein sequence
CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWKRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYGCANDKFGGCGSILSLHLGSCEAHTSGN
RQGRGFKCTAGTMASEAVALFRSFYEQGNPNAPKPHRPLVHHQAGQ