CuGenDBv2

Gene ID	MS002225
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold30:3357614..3357764
RNA-Seq Expression	MS002225
Synteny	MS002225
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABR14704.1 photosystem II CP43 protein, partial [Hanguana malayana]

2.3e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

KAB2017079.1 hypothetical protein ES319_D08G135500v1 [Gossypium barbadense]

2.3e-16

91.67

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI
        KITNLTLSPSVIFGYLLKSPFRGEGW+VSVDDL+DI+ GHVWLGSICI
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI

QUB02840.1 photosystem II CP43 chlorophyll apoprotein [Weldenia candida]

2.3e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

XP_022975445.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima]

2.3e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

YP_009751902.1 photosystem II 43 kDa protein [Cyclanthera pedata]

2.3e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU06 Photosystem II CP43 reaction center protein

1.1e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A0A1X9Q1T4 Photosystem II CP43 reaction center protein

1.1e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A0A218KG40 Photosystem II CP43 reaction center protein

1.1e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A0A249RZ79 Photosystem II CP43 reaction center protein

1.1e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A0A6M3RWB3 Photosystem II CP43 reaction center protein

1.1e-16

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

SwissProt top hits

e value

%identity

Alignment

A6MMK3 Photosystem II CP43 reaction center protein

4.0e-19

91.84

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A8SE99 Photosystem II CP43 reaction center protein

4.0e-19

91.84

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

A9LYI1 Photosystem II CP43 reaction center protein

4.0e-19

91.84

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

Q2QD93 Photosystem II CP43 reaction center protein

3.1e-19

93.88

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDIV GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

Q3V538 Photosystem II CP43 reaction center protein

4.0e-19

91.84

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICIL
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICIL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

6.3e-20

91.67

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Query:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI
        KITNLTLSPSVIFGYLLKSPF GEGW+VSVDDLEDI+ GHVWLGSICI
Subjt:  KITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIV-GHVWLGSICI

Sequences

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CDS sequence

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TATTTAAAAATTACCAACTTGACCCTTAGCCCAAGCGTTATATTTGGTTATTTACTAAAATCTCCTTTTAGAGGAGAAGGATGGATGGTTAGTGTAGACGATTTGGAAGA
TATAGTTGGGCATGTATGGTTAGGTTCCATTTGCATACTT

mRNA sequence

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TATTTAAAAATTACCAACTTGACCCTTAGCCCAAGCGTTATATTTGGTTATTTACTAAAATCTCCTTTTAGAGGAGAAGGATGGATGGTTAGTGTAGACGATTTGGAAGA
TATAGTTGGGCATGTATGGTTAGGTTCCATTTGCATACTT

Protein sequence

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YLKITNLTLSPSVIFGYLLKSPFRGEGWMVSVDDLEDIVGHVWLGSICIL

MS002225 (gene) of Bitter gourd (TR) v1 genome